miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19722 3' -54.1 NC_004686.1 + 1326 0.67 0.766582
Target:  5'- uGACGCGUUucaGGUUGGCGgGCCgGCGcggguccuuACCg -3'
miRNA:   3'- -CUGCGUAG---CCAGCUGU-UGGgCGU---------UGG- -5'
19722 3' -54.1 NC_004686.1 + 3514 0.72 0.457738
Target:  5'- aGGCGCGUCGGgccauggcCGACAAacgCCGCGuucaggGCCg -3'
miRNA:   3'- -CUGCGUAGCCa-------GCUGUUg--GGCGU------UGG- -5'
19722 3' -54.1 NC_004686.1 + 4034 0.67 0.766582
Target:  5'- -uUGCAUCauGGUCG-CcuCCCGCGGCg -3'
miRNA:   3'- cuGCGUAG--CCAGCuGuuGGGCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 4110 0.76 0.278846
Target:  5'- gGGCGcCAUUGGcguuuaUCGAUAGCCUGCAAUCg -3'
miRNA:   3'- -CUGC-GUAGCC------AGCUGUUGGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 6242 0.66 0.800193
Target:  5'- cGGCGC--CGGUCG---GCCCGCAugggagaugguuuucGCCa -3'
miRNA:   3'- -CUGCGuaGCCAGCuguUGGGCGU---------------UGG- -5'
19722 3' -54.1 NC_004686.1 + 6318 0.69 0.627251
Target:  5'- --aGCAUucgCGGUCGACAccgugGCCUGCGggaauuACCa -3'
miRNA:   3'- cugCGUA---GCCAGCUGU-----UGGGCGU------UGG- -5'
19722 3' -54.1 NC_004686.1 + 8066 0.74 0.34799
Target:  5'- -cCGCGU-GGUCGACGgggugaagACCCGCAugCu -3'
miRNA:   3'- cuGCGUAgCCAGCUGU--------UGGGCGUugG- -5'
19722 3' -54.1 NC_004686.1 + 8535 0.69 0.615173
Target:  5'- aACGCAuucaccuUCGGcCGcACAaacACCCGCGGCUc -3'
miRNA:   3'- cUGCGU-------AGCCaGC-UGU---UGGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 11152 0.71 0.529653
Target:  5'- uAUGCGUUGcGUgCGGCGAUCCGC-GCCg -3'
miRNA:   3'- cUGCGUAGC-CA-GCUGUUGGGCGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 12333 0.68 0.660179
Target:  5'- -cCGCAagGGgCGGCuauGCCgGCGGCCa -3'
miRNA:   3'- cuGCGUagCCaGCUGu--UGGgCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 12459 0.73 0.4097
Target:  5'- uGGCGCGgcggcccaGGUUG-CGugCCGCGACCa -3'
miRNA:   3'- -CUGCGUag------CCAGCuGUugGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 16864 0.67 0.766582
Target:  5'- --aGUGUUGcGUUGGCGGCCgGCAACa -3'
miRNA:   3'- cugCGUAGC-CAGCUGUUGGgCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 18370 0.74 0.338916
Target:  5'- -cCGCAUgGGgCGACGGCCCGCcuaucucagaacaAGCCa -3'
miRNA:   3'- cuGCGUAgCCaGCUGUUGGGCG-------------UUGG- -5'
19722 3' -54.1 NC_004686.1 + 18956 0.66 0.805925
Target:  5'- cGGCGCGggagCGGggGAaccauGCCCGC-GCCg -3'
miRNA:   3'- -CUGCGUa---GCCagCUgu---UGGGCGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 19078 0.69 0.627251
Target:  5'- uGGCGCAguUCGGUgagggCGGCuGGCCCGguaAGCCg -3'
miRNA:   3'- -CUGCGU--AGCCA-----GCUG-UUGGGCg--UUGG- -5'
19722 3' -54.1 NC_004686.1 + 19838 0.66 0.776653
Target:  5'- aGCGCGUCGaGuucuUCGACGgucucaaucACCCugggacGCAGCCg -3'
miRNA:   3'- cUGCGUAGC-C----AGCUGU---------UGGG------CGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 21244 0.66 0.776653
Target:  5'- cGGCGUA-CGGaUUGACGuucgGCCCgGUGACCa -3'
miRNA:   3'- -CUGCGUaGCC-AGCUGU----UGGG-CGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 21969 0.66 0.776653
Target:  5'- cGACGCG-CGGacUCGGCGgcGCUgGCGguGCCa -3'
miRNA:   3'- -CUGCGUaGCC--AGCUGU--UGGgCGU--UGG- -5'
19722 3' -54.1 NC_004686.1 + 22126 0.69 0.627251
Target:  5'- uGGCGCGcgCGGccUCGGCGGCaCCGCugucaucACCg -3'
miRNA:   3'- -CUGCGUa-GCC--AGCUGUUG-GGCGu------UGG- -5'
19722 3' -54.1 NC_004686.1 + 22532 0.66 0.786574
Target:  5'- cGACGCAgcacGUCcuccuACAACCCGCcgcAGCCg -3'
miRNA:   3'- -CUGCGUagc-CAGc----UGUUGGGCG---UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.