Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 27432 | 0.67 | 0.756375 |
Target: 5'- -cCGC--CGGggucucauguUCGGCAACCCGCGccgcGCCa -3' miRNA: 3'- cuGCGuaGCC----------AGCUGUUGGGCGU----UGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 53818 | 0.68 | 0.660179 |
Target: 5'- --aGCAUCGG--GACGAaaCGCAACCa -3' miRNA: 3'- cugCGUAGCCagCUGUUggGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 12333 | 0.68 | 0.660179 |
Target: 5'- -cCGCAagGGgCGGCuauGCCgGCGGCCa -3' miRNA: 3'- cuGCGUagCCaGCUGu--UGGgCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 24270 | 0.68 | 0.660179 |
Target: 5'- gGACGCccaaccCGGUaugugCGACAACCaCGgAACCg -3' miRNA: 3'- -CUGCGua----GCCA-----GCUGUUGG-GCgUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 52141 | 0.68 | 0.664558 |
Target: 5'- -cCGCAcaGGUCGACAAguggugcgacaagauCaCCGCAACCc -3' miRNA: 3'- cuGCGUagCCAGCUGUU---------------G-GGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 27147 | 0.68 | 0.692872 |
Target: 5'- aGGCGUGUgucacuggaaacCGGUCGGCGACugggacaccaCCGCGuuGCCg -3' miRNA: 3'- -CUGCGUA------------GCCAGCUGUUG----------GGCGU--UGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 25803 | 0.68 | 0.703667 |
Target: 5'- --aGCGUCcuGGUacuggcugugCGcCGGCCCGCGGCCg -3' miRNA: 3'- cugCGUAG--CCA----------GCuGUUGGGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 53109 | 0.68 | 0.714393 |
Target: 5'- cACGCAUCuGGUgGuGC-AUCCGCGGCUa -3' miRNA: 3'- cUGCGUAG-CCAgC-UGuUGGGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 36756 | 0.67 | 0.735591 |
Target: 5'- --gGCA-CGGUCgugguGACGACCCGCc-CCg -3' miRNA: 3'- cugCGUaGCCAG-----CUGUUGGGCGuuGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 51971 | 0.69 | 0.638236 |
Target: 5'- cGACGCc---GUCGACAucAUCCGCGACa -3' miRNA: 3'- -CUGCGuagcCAGCUGU--UGGGCGUUGg -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 45525 | 0.69 | 0.627251 |
Target: 5'- cACGUAcaugCGGUUGcGCAGCCUgauaGCAGCCa -3' miRNA: 3'- cUGCGUa---GCCAGC-UGUUGGG----CGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 22126 | 0.69 | 0.627251 |
Target: 5'- uGGCGCGcgCGGccUCGGCGGCaCCGCugucaucACCg -3' miRNA: 3'- -CUGCGUa-GCC--AGCUGUUG-GGCGu------UGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 56055 | 0.75 | 0.323652 |
Target: 5'- -uCGCcuggCGGuUCGGC-ACCCGCGACCg -3' miRNA: 3'- cuGCGua--GCC-AGCUGuUGGGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 8066 | 0.74 | 0.34799 |
Target: 5'- -cCGCGU-GGUCGACGgggugaagACCCGCAugCu -3' miRNA: 3'- cuGCGUAgCCAGCUGU--------UGGGCGUugG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 3514 | 0.72 | 0.457738 |
Target: 5'- aGGCGCGUCGGgccauggcCGACAAacgCCGCGuucaggGCCg -3' miRNA: 3'- -CUGCGUAGCCa-------GCUGUUg--GGCGU------UGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 30471 | 0.71 | 0.486942 |
Target: 5'- uGCGCAcCGGcCGugAaugccucACCCGCGAUCg -3' miRNA: 3'- cUGCGUaGCCaGCugU-------UGGGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 11152 | 0.71 | 0.529653 |
Target: 5'- uAUGCGUUGcGUgCGGCGAUCCGC-GCCg -3' miRNA: 3'- cUGCGUAGC-CA-GCUGUUGGGCGuUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 43725 | 0.69 | 0.605304 |
Target: 5'- cGACGU--UGGUCG-CGGCaCGCAACCu -3' miRNA: 3'- -CUGCGuaGCCAGCuGUUGgGCGUUGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 6318 | 0.69 | 0.627251 |
Target: 5'- --aGCAUucgCGGUCGACAccgugGCCUGCGggaauuACCa -3' miRNA: 3'- cugCGUA---GCCAGCUGU-----UGGGCGU------UGG- -5' |
|||||||
19722 | 3' | -54.1 | NC_004686.1 | + | 19078 | 0.69 | 0.627251 |
Target: 5'- uGGCGCAguUCGGUgagggCGGCuGGCCCGguaAGCCg -3' miRNA: 3'- -CUGCGU--AGCCA-----GCUG-UUGGGCg--UUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home