miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19722 5' -47.6 NC_004686.1 + 51387 0.66 0.988121
Target:  5'- uGCGAUUGC-GGCUGguccaugaacacucgCGAU-GACGUg -3'
miRNA:   3'- -UGCUAACGuCCGAUa--------------GCUAuUUGCGg -5'
19722 5' -47.6 NC_004686.1 + 50188 0.66 0.986912
Target:  5'- gGCGAUgucaucggGCAGGuCUGcggcuUUGAUGAucucagucacgggucACGCCa -3'
miRNA:   3'- -UGCUAa-------CGUCC-GAU-----AGCUAUU---------------UGCGG- -5'
19722 5' -47.6 NC_004686.1 + 17551 0.66 0.98618
Target:  5'- cCGAUUccGCAgcGGCga-CGAaGAACGCCa -3'
miRNA:   3'- uGCUAA--CGU--CCGauaGCUaUUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 50899 0.66 0.98618
Target:  5'- gACGAUguUGguGG-UGUCGAggaucuuCGCCg -3'
miRNA:   3'- -UGCUA--ACguCCgAUAGCUauuu---GCGG- -5'
19722 5' -47.6 NC_004686.1 + 16270 0.66 0.98618
Target:  5'- cACGcgUGCuuguccucaacagGGGCgagcaugaaugacagGUCGAUGAugGUCa -3'
miRNA:   3'- -UGCuaACG-------------UCCGa--------------UAGCUAUUugCGG- -5'
19722 5' -47.6 NC_004686.1 + 35984 0.66 0.98618
Target:  5'- gACGAgUGagAGGCgUAUUGAUGAguuGCGUCg -3'
miRNA:   3'- -UGCUaACg-UCCG-AUAGCUAUU---UGCGG- -5'
19722 5' -47.6 NC_004686.1 + 50018 0.66 0.981808
Target:  5'- uGCGAUUGCAgagcaccggauccGGCUugCGAccAGCGCa -3'
miRNA:   3'- -UGCUAACGU-------------CCGAuaGCUauUUGCGg -5'
19722 5' -47.6 NC_004686.1 + 11788 0.67 0.979646
Target:  5'- -gGAUccaUGUaugGGGCUGgggCGAaGGGCGCCa -3'
miRNA:   3'- ugCUA---ACG---UCCGAUa--GCUaUUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 3194 0.67 0.979646
Target:  5'- gGCGAUUucuGGGUUGUCGAauccGACGUCg -3'
miRNA:   3'- -UGCUAAcg-UCCGAUAGCUau--UUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 43487 0.67 0.974165
Target:  5'- -----cGCGGcGCUGUCGGUGgguaucgucgcGACGCUg -3'
miRNA:   3'- ugcuaaCGUC-CGAUAGCUAU-----------UUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 4375 0.67 0.971054
Target:  5'- gGCGGgugGUGGGUUugggGUCGAUGAGUGCUg -3'
miRNA:   3'- -UGCUaa-CGUCCGA----UAGCUAUUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 1867 0.67 0.967683
Target:  5'- aGCGAgagUGCAuGCUGcagGGUGGACGUCa -3'
miRNA:   3'- -UGCUa--ACGUcCGAUag-CUAUUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 1030 0.67 0.967683
Target:  5'- -aGAUUGCGGGa-AUCGuaGAGCGUCc -3'
miRNA:   3'- ugCUAACGUCCgaUAGCuaUUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 38905 0.68 0.965532
Target:  5'- aACGAguuggguguguggGCGGGUUuUCGGagaagGAACGCCa -3'
miRNA:   3'- -UGCUaa-----------CGUCCGAuAGCUa----UUUGCGG- -5'
19722 5' -47.6 NC_004686.1 + 24642 0.68 0.964043
Target:  5'- gGCGA-UGCAGGCguUGUUGAcguuGCuGCCg -3'
miRNA:   3'- -UGCUaACGUCCG--AUAGCUauu-UG-CGG- -5'
19722 5' -47.6 NC_004686.1 + 3288 0.68 0.955924
Target:  5'- gGCGAU--CAGGCgg-CGAgccauGCGCCg -3'
miRNA:   3'- -UGCUAacGUCCGauaGCUauu--UGCGG- -5'
19722 5' -47.6 NC_004686.1 + 31981 0.69 0.941548
Target:  5'- uGCGAUUGCGaagacgguGGCUGUUGcgGuGCGUa -3'
miRNA:   3'- -UGCUAACGU--------CCGAUAGCuaUuUGCGg -5'
19722 5' -47.6 NC_004686.1 + 4412 0.69 0.936152
Target:  5'- gGCGAUgccgaguuuuuUGCGGGCUucgaCGAUGu-UGCCg -3'
miRNA:   3'- -UGCUA-----------ACGUCCGAua--GCUAUuuGCGG- -5'
19722 5' -47.6 NC_004686.1 + 17809 0.69 0.926273
Target:  5'- cCGGUUGCAGGUgauuccgcaucgcggCGAUGugguggauGCGCCu -3'
miRNA:   3'- uGCUAACGUCCGaua------------GCUAUu-------UGCGG- -5'
19722 5' -47.6 NC_004686.1 + 52860 0.7 0.90456
Target:  5'- aACGAUcGguGGCcgGUCGGaaugAAACGUCg -3'
miRNA:   3'- -UGCUAaCguCCGa-UAGCUa---UUUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.