miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 38303 0.69 0.520985
Target:  5'- cCUUACGCAGCcgcucgGCCUcGCCCGGgGuGAa -3'
miRNA:   3'- aGAGUGCGUCG------UGGAcCGGGUCgC-CU- -5'
19734 3' -60.8 NC_004687.1 + 39042 0.68 0.579417
Target:  5'- aUCUCcUGgAGCACCUcGCCCcaagucGGCGGGu -3'
miRNA:   3'- -AGAGuGCgUCGUGGAcCGGG------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 39581 0.69 0.502001
Target:  5'- cUUCuACGCGGCcaGCCUGcGCaCGGCGGAc -3'
miRNA:   3'- aGAG-UGCGUCG--UGGAC-CGgGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 40506 0.71 0.420821
Target:  5'- aCUCAuCGCcGCACUccuUGGCCCGcGCGGc -3'
miRNA:   3'- aGAGU-GCGuCGUGG---ACCGGGU-CGCCu -5'
19734 3' -60.8 NC_004687.1 + 41996 0.66 0.659049
Target:  5'- gUUgGCGCAGaagAUCgugGuGCCCGGCGGAg -3'
miRNA:   3'- aGAgUGCGUCg--UGGa--C-CGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 44928 0.68 0.573495
Target:  5'- -aUCGCGCAGCgcgccggauacgGCggcgacuacaacucgCUGGCCCAGCaGAa -3'
miRNA:   3'- agAGUGCGUCG------------UG---------------GACCGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 47155 0.66 0.682855
Target:  5'- aUCUUGCggaucggccagaacaGCAGCACCgacaucGGCUCcucGGCGGAa -3'
miRNA:   3'- -AGAGUG---------------CGUCGUGGa-----CCGGG---UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 50727 0.66 0.708383
Target:  5'- gUCUCcaGCGCgGGCACC-GGCCUguucaccgugugGGUGGGc -3'
miRNA:   3'- -AGAG--UGCG-UCGUGGaCCGGG------------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 50980 0.66 0.668989
Target:  5'- --cCugGCGGCgACCggcggUGGUCUGGCGGGa -3'
miRNA:   3'- agaGugCGUCG-UGG-----ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 55444 0.69 0.483326
Target:  5'- aCUcCACcaAGgACgUGGCCCAGCGGAc -3'
miRNA:   3'- aGA-GUGcgUCgUGgACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 64364 0.73 0.318766
Target:  5'- -aUCGCGCGGCGCaucuuCCCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCGUGgacc-GGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 64905 0.74 0.272009
Target:  5'- cCUCgGCGCGGCGCg-GGCCCAGCcGAu -3'
miRNA:   3'- aGAG-UGCGUCGUGgaCCGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 66352 0.66 0.668989
Target:  5'- gCUCGCuguuggcgucGUAGUACC-GGacgcCCCAGCGGAu -3'
miRNA:   3'- aGAGUG----------CGUCGUGGaCC----GGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 66936 0.67 0.599243
Target:  5'- ---uGCGCAGCugUUGGCCCGGg--- -3'
miRNA:   3'- agagUGCGUCGugGACCGGGUCgccu -5'
19734 3' -60.8 NC_004687.1 + 68184 0.69 0.502001
Target:  5'- gUCggCGCcCAGCugCgGGCCCAGCGa- -3'
miRNA:   3'- -AGa-GUGcGUCGugGaCCGGGUCGCcu -5'
19734 3' -60.8 NC_004687.1 + 68697 0.72 0.348085
Target:  5'- -gUCACGCcgGGCcaGCCUGGCgCCGGUGGc -3'
miRNA:   3'- agAGUGCG--UCG--UGGACCG-GGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 68762 0.66 0.659049
Target:  5'- cCUCGCGCuGCGCgacGCCauCAGCGGGa -3'
miRNA:   3'- aGAGUGCGuCGUGgacCGG--GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 68797 0.67 0.649089
Target:  5'- --aCACGCugcauguccAGCACCUGGCgCCAGUu-- -3'
miRNA:   3'- agaGUGCG---------UCGUGGACCG-GGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 68912 0.67 0.636122
Target:  5'- aUCggcCACG-AGCugCUGcucaagaccgaagaGCCCGGCGGAc -3'
miRNA:   3'- -AGa--GUGCgUCGugGAC--------------CGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 70398 0.66 0.708383
Target:  5'- aUCgUCGCG-GGCACCgGcGCCCAGCcGAu -3'
miRNA:   3'- -AG-AGUGCgUCGUGGaC-CGGGUCGcCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.