miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 1061 0.69 0.502001
Target:  5'- -aUCACGCGcuGCGCCUGGCCauccagGGCGc- -3'
miRNA:   3'- agAGUGCGU--CGUGGACCGGg-----UCGCcu -5'
19734 3' -60.8 NC_004687.1 + 1266 0.66 0.698606
Target:  5'- gCUCgcagcguaGCGCAGCGCCaccaGGUCCAGgugacccugaCGGAa -3'
miRNA:   3'- aGAG--------UGCGUCGUGGa---CCGGGUC----------GCCU- -5'
19734 3' -60.8 NC_004687.1 + 2714 0.7 0.464992
Target:  5'- cCUCGCGCAGCAgCagcaGGCCC-GCGa- -3'
miRNA:   3'- aGAGUGCGUCGUgGa---CCGGGuCGCcu -5'
19734 3' -60.8 NC_004687.1 + 3361 0.67 0.629137
Target:  5'- cCUCGCGCAuCACCUuGCCC-GCGa- -3'
miRNA:   3'- aGAGUGCGUcGUGGAcCGGGuCGCcu -5'
19734 3' -60.8 NC_004687.1 + 6635 0.71 0.403874
Target:  5'- cCUUGCGCuuAGCGCUgGGCUCGGUGGGc -3'
miRNA:   3'- aGAGUGCG--UCGUGGaCCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 7205 0.71 0.412294
Target:  5'- aUCUCGCGCc-CACUcuUGaGCCCGGCGGc -3'
miRNA:   3'- -AGAGUGCGucGUGG--AC-CGGGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 8639 0.66 0.708383
Target:  5'- gCUCGCGCAgGUACUUGcaGUCCAucaccguguuGCGGAu -3'
miRNA:   3'- aGAGUGCGU-CGUGGAC--CGGGU----------CGCCU- -5'
19734 3' -60.8 NC_004687.1 + 10920 0.66 0.708383
Target:  5'- aCUCuggggccgggguGCGgAGCuggcCCUGGUCuCGGCGGAc -3'
miRNA:   3'- aGAG------------UGCgUCGu---GGACCGG-GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 11433 0.67 0.599243
Target:  5'- ---aACGCcgAGgACCUGGCCgAGUGGGc -3'
miRNA:   3'- agagUGCG--UCgUGGACCGGgUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 16054 0.68 0.579417
Target:  5'- --cCGCGCuGCACCU-GUCCGGUGGu -3'
miRNA:   3'- agaGUGCGuCGUGGAcCGGGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 16232 0.67 0.639115
Target:  5'- cCUU-CGCc-CACCUGGCCCAGCccgccuGGAc -3'
miRNA:   3'- aGAGuGCGucGUGGACCGGGUCG------CCU- -5'
19734 3' -60.8 NC_004687.1 + 17068 0.71 0.387366
Target:  5'- cCUCcgGgGCGGCACCgauguccuccGGCgCCAGCGGAu -3'
miRNA:   3'- aGAG--UgCGUCGUGGa---------CCG-GGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 20562 0.67 0.609194
Target:  5'- gCUgACGCGGCAgcacgaUCUGGgCCAGCuGAg -3'
miRNA:   3'- aGAgUGCGUCGU------GGACCgGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 23032 0.66 0.659049
Target:  5'- ---aACGCAGCuCgUGGUCgCGGCGGGc -3'
miRNA:   3'- agagUGCGUCGuGgACCGG-GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 23748 0.72 0.374483
Target:  5'- uUCU-GCGCAGCgccgACCUGGCCCAggccgucaagguccuGCGGu -3'
miRNA:   3'- -AGAgUGCGUCG----UGGACCGGGU---------------CGCCu -5'
19734 3' -60.8 NC_004687.1 + 25101 0.66 0.698606
Target:  5'- aUC-CACGCcgguGGCcCCUGGUCCAGagaucucuCGGAg -3'
miRNA:   3'- -AGaGUGCG----UCGuGGACCGGGUC--------GCCU- -5'
19734 3' -60.8 NC_004687.1 + 27890 0.66 0.708383
Target:  5'- -gUCGCGCGGCguGCCa---CCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCG--UGGaccgGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 31051 0.68 0.576455
Target:  5'- --cCugGCAGCGCUacuacgaucacaugUcGGCCCAGcCGGAc -3'
miRNA:   3'- agaGugCGUCGUGG--------------A-CCGGGUC-GCCU- -5'
19734 3' -60.8 NC_004687.1 + 36350 0.69 0.483326
Target:  5'- --aCACcCAGCACCUGGC-CAGCGa- -3'
miRNA:   3'- agaGUGcGUCGUGGACCGgGUCGCcu -5'
19734 3' -60.8 NC_004687.1 + 36520 0.72 0.363451
Target:  5'- aUCUCgaACGCcccuggguggGGCACCUGGCCgCAGCa-- -3'
miRNA:   3'- -AGAG--UGCG----------UCGUGGACCGG-GUCGccu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.