miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 153561 0.65 0.715191
Target:  5'- -aUCugGCGGCG-CUGGCCgaccugcgcaacgaUAGCGGu -3'
miRNA:   3'- agAGugCGUCGUgGACCGG--------------GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 70701 0.66 0.688775
Target:  5'- aCUCGCaaGGUgauCCgaggcuucucgGGCCCGGCGGAg -3'
miRNA:   3'- aGAGUGcgUCGu--GGa----------CCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 149314 0.66 0.677911
Target:  5'- cCUCGauCGCGGuCGCCgacuacgUGGCCCgcAGCGGu -3'
miRNA:   3'- aGAGU--GCGUC-GUGG-------ACCGGG--UCGCCu -5'
19734 3' -60.8 NC_004687.1 + 108204 0.66 0.6789
Target:  5'- cUUUCG-GCgAGCGCCUgcgGGCCCuGGUGGAc -3'
miRNA:   3'- -AGAGUgCG-UCGUGGA---CCGGG-UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 152881 0.66 0.6789
Target:  5'- aCgagCuCGCGGCcuacuuCCUGGCCCGGCa-- -3'
miRNA:   3'- aGa--GuGCGUCGu-----GGACCGGGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 111837 0.66 0.659049
Target:  5'- -gUCgACGCGacCGCCUgGGCCUGGCGGGc -3'
miRNA:   3'- agAG-UGCGUc-GUGGA-CCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 68762 0.66 0.659049
Target:  5'- cCUCGCGCuGCGCgacGCCauCAGCGGGa -3'
miRNA:   3'- aGAGUGCGuCGUGgacCGG--GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 50980 0.66 0.668989
Target:  5'- --cCugGCGGCgACCggcggUGGUCUGGCGGGa -3'
miRNA:   3'- agaGugCGUCG-UGG-----ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 25101 0.66 0.698606
Target:  5'- aUC-CACGCcgguGGCcCCUGGUCCAGagaucucuCGGAg -3'
miRNA:   3'- -AGaGUGCG----UCGuGGACCGGGUC--------GCCU- -5'
19734 3' -60.8 NC_004687.1 + 87450 0.66 0.707408
Target:  5'- uUCUgGCGCAGCGC--GGCCaugccggaccccuCGGCGGu -3'
miRNA:   3'- -AGAgUGCGUCGUGgaCCGG-------------GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 148835 0.66 0.668989
Target:  5'- --cCGCGCgugaggAGCGCaaGGCCgAGCGGGc -3'
miRNA:   3'- agaGUGCG------UCGUGgaCCGGgUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 41996 0.66 0.659049
Target:  5'- gUUgGCGCAGaagAUCgugGuGCCCGGCGGAg -3'
miRNA:   3'- aGAgUGCGUCg--UGGa--C-CGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 120802 0.66 0.708383
Target:  5'- uUCUC-CaGCGGCGCC-GGUgCgGGCGGAg -3'
miRNA:   3'- -AGAGuG-CGUCGUGGaCCG-GgUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 70398 0.66 0.708383
Target:  5'- aUCgUCGCG-GGCACCgGcGCCCAGCcGAu -3'
miRNA:   3'- -AG-AGUGCgUCGUGGaC-CGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 27890 0.66 0.708383
Target:  5'- -gUCGCGCGGCguGCCa---CCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCG--UGGaccgGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 132033 0.66 0.708383
Target:  5'- cCUCGCGCAGCACggUGuGCUCGGgaaccUGGAc -3'
miRNA:   3'- aGAGUGCGUCGUGg-AC-CGGGUC-----GCCU- -5'
19734 3' -60.8 NC_004687.1 + 50727 0.66 0.708383
Target:  5'- gUCUCcaGCGCgGGCACC-GGCCUguucaccgugugGGUGGGc -3'
miRNA:   3'- -AGAG--UGCG-UCGUGGaCCGGG------------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 135779 0.66 0.708383
Target:  5'- -aUCAUGCGGCcagcGCCgcgaacgggcugUGGgUCAGCGGAg -3'
miRNA:   3'- agAGUGCGUCG----UGG------------ACCgGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 23032 0.66 0.659049
Target:  5'- ---aACGCAGCuCgUGGUCgCGGCGGGc -3'
miRNA:   3'- agagUGCGUCGuGgACCGG-GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 10920 0.66 0.708383
Target:  5'- aCUCuggggccgggguGCGgAGCuggcCCUGGUCuCGGCGGAc -3'
miRNA:   3'- aGAG------------UGCgUCGu---GGACCGG-GUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.