miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 155042 1.08 0.001066
Target:  5'- uUCUCACGCAGCACCUGGCCCAGCGGAu -3'
miRNA:   3'- -AGAGUGCGUCGUGGACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 106952 0.82 0.0806
Target:  5'- aUCggCACGCcgGGCGCCUGGCCCuguGGCGGGa -3'
miRNA:   3'- -AGa-GUGCG--UCGUGGACCGGG---UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 73745 0.75 0.220185
Target:  5'- gUCUCGCcgaugaccgGCGGCAgCgGGCCCGGCGGc -3'
miRNA:   3'- -AGAGUG---------CGUCGUgGaCCGGGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 131045 0.75 0.227655
Target:  5'- gCUCAagaaggccCGCGuGCACCcgaucaacgugcuggUGGCCCAGCGGAc -3'
miRNA:   3'- aGAGU--------GCGU-CGUGG---------------ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 145534 0.74 0.272009
Target:  5'- cCUCGgGCGucuGCucggucuugAUCUGGCCCAGCGGAu -3'
miRNA:   3'- aGAGUgCGU---CG---------UGGACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 64905 0.74 0.272009
Target:  5'- cCUCgGCGCGGCGCg-GGCCCAGCcGAu -3'
miRNA:   3'- aGAG-UGCGUCGUGgaCCGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 64364 0.73 0.318766
Target:  5'- -aUCGCGCGGCGCaucuuCCCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCGUGgacc-GGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 136690 0.72 0.333189
Target:  5'- ---gAUGCAGCGCgCUGGCCUgcgucuGGCGGAc -3'
miRNA:   3'- agagUGCGUCGUG-GACCGGG------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 68697 0.72 0.348085
Target:  5'- -gUCACGCcgGGCcaGCCUGGCgCCGGUGGc -3'
miRNA:   3'- agAGUGCG--UCG--UGGACCG-GGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 104220 0.72 0.355709
Target:  5'- -aUCGUGCAGCGCCUggucgaucaGGCCgCAGCGGu -3'
miRNA:   3'- agAGUGCGUCGUGGA---------CCGG-GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 36520 0.72 0.363451
Target:  5'- aUCUCgaACGCcccuggguggGGCACCUGGCCgCAGCa-- -3'
miRNA:   3'- -AGAG--UGCG----------UCGUGGACCGG-GUCGccu -5'
19734 3' -60.8 NC_004687.1 + 135333 0.72 0.371308
Target:  5'- gCUCGCGCAGCgacccGCCguugGGCUUGGcCGGAu -3'
miRNA:   3'- aGAGUGCGUCG-----UGGa---CCGGGUC-GCCU- -5'
19734 3' -60.8 NC_004687.1 + 23748 0.72 0.374483
Target:  5'- uUCU-GCGCAGCgccgACCUGGCCCAggccgucaagguccuGCGGu -3'
miRNA:   3'- -AGAgUGCGUCG----UGGACCGGGU---------------CGCCu -5'
19734 3' -60.8 NC_004687.1 + 91027 0.71 0.37928
Target:  5'- --cCGCGCcGCGCCgaGGCCCAcgcGCGGGa -3'
miRNA:   3'- agaGUGCGuCGUGGa-CCGGGU---CGCCU- -5'
19734 3' -60.8 NC_004687.1 + 17068 0.71 0.387366
Target:  5'- cCUCcgGgGCGGCACCgauguccuccGGCgCCAGCGGAu -3'
miRNA:   3'- aGAG--UgCGUCGUGGa---------CCG-GGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 6635 0.71 0.403874
Target:  5'- cCUUGCGCuuAGCGCUgGGCUCGGUGGGc -3'
miRNA:   3'- aGAGUGCG--UCGUGGaCCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 78295 0.71 0.409757
Target:  5'- uUC-CA-GCAGCGuCCguccuggggcacggUGGCCCAGCGGAu -3'
miRNA:   3'- -AGaGUgCGUCGU-GG--------------ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 112769 0.71 0.412294
Target:  5'- gCUC-CGCAGCACC-GGCuCCGGCa-- -3'
miRNA:   3'- aGAGuGCGUCGUGGaCCG-GGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 7205 0.71 0.412294
Target:  5'- aUCUCGCGCc-CACUcuUGaGCCCGGCGGc -3'
miRNA:   3'- -AGAGUGCGucGUGG--AC-CGGGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 40506 0.71 0.420821
Target:  5'- aCUCAuCGCcGCACUccuUGGCCCGcGCGGc -3'
miRNA:   3'- aGAGU-GCGuCGUGG---ACCGGGU-CGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.