miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 31051 0.68 0.576455
Target:  5'- --cCugGCAGCGCUacuacgaucacaugUcGGCCCAGcCGGAc -3'
miRNA:   3'- agaGugCGUCGUGG--------------A-CCGGGUC-GCCU- -5'
19734 3' -60.8 NC_004687.1 + 55444 0.69 0.483326
Target:  5'- aCUcCACcaAGgACgUGGCCCAGCGGAc -3'
miRNA:   3'- aGA-GUGcgUCgUGgACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 39581 0.69 0.502001
Target:  5'- cUUCuACGCGGCcaGCCUGcGCaCGGCGGAc -3'
miRNA:   3'- aGAG-UGCGUCG--UGGAC-CGgGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 1061 0.69 0.502001
Target:  5'- -aUCACGCGcuGCGCCUGGCCauccagGGCGc- -3'
miRNA:   3'- agAGUGCGU--CGUGGACCGGg-----UCGCcu -5'
19734 3' -60.8 NC_004687.1 + 102122 0.69 0.508612
Target:  5'- uUCUCgGCGUAGCGgcugacgaaguccuCCUugGuGCCCAGCGGGu -3'
miRNA:   3'- -AGAG-UGCGUCGU--------------GGA--C-CGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 102576 0.69 0.520985
Target:  5'- cCUCGucgaGCAGCGCgCgGGCCCcGGCGGc -3'
miRNA:   3'- aGAGUg---CGUCGUG-GaCCGGG-UCGCCu -5'
19734 3' -60.8 NC_004687.1 + 115714 0.69 0.530583
Target:  5'- gCUCAUGCAGUACCgcgaUGGUCU-GUGGGc -3'
miRNA:   3'- aGAGUGCGUCGUGG----ACCGGGuCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 154277 0.68 0.559735
Target:  5'- cCUguCGUccCACCUGGCCgAGCGGu -3'
miRNA:   3'- aGAguGCGucGUGGACCGGgUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 44928 0.68 0.573495
Target:  5'- -aUCGCGCAGCgcgccggauacgGCggcgacuacaacucgCUGGCCCAGCaGAa -3'
miRNA:   3'- agAGUGCGUCG------------UG---------------GACCGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 36350 0.69 0.483326
Target:  5'- --aCACcCAGCACCUGGC-CAGCGa- -3'
miRNA:   3'- agaGUGcGUCGUGGACCGgGUCGCcu -5'
19734 3' -60.8 NC_004687.1 + 140133 0.7 0.43819
Target:  5'- --aCAC-CAGCACCUacaccaccGGCCUGGCGGGc -3'
miRNA:   3'- agaGUGcGUCGUGGA--------CCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 78503 0.7 0.429454
Target:  5'- --gCAC-CGGCACCgguaugGGCaCCGGCGGAc -3'
miRNA:   3'- agaGUGcGUCGUGGa-----CCG-GGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 131045 0.75 0.227655
Target:  5'- gCUCAagaaggccCGCGuGCACCcgaucaacgugcuggUGGCCCAGCGGAc -3'
miRNA:   3'- aGAGU--------GCGU-CGUGG---------------ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 64905 0.74 0.272009
Target:  5'- cCUCgGCGCGGCGCg-GGCCCAGCcGAu -3'
miRNA:   3'- aGAG-UGCGUCGUGgaCCGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 64364 0.73 0.318766
Target:  5'- -aUCGCGCGGCGCaucuuCCCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCGUGgacc-GGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 68697 0.72 0.348085
Target:  5'- -gUCACGCcgGGCcaGCCUGGCgCCGGUGGc -3'
miRNA:   3'- agAGUGCG--UCG--UGGACCG-GGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 104220 0.72 0.355709
Target:  5'- -aUCGUGCAGCGCCUggucgaucaGGCCgCAGCGGu -3'
miRNA:   3'- agAGUGCGUCGUGGA---------CCGG-GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 36520 0.72 0.363451
Target:  5'- aUCUCgaACGCcccuggguggGGCACCUGGCCgCAGCa-- -3'
miRNA:   3'- -AGAG--UGCG----------UCGUGGACCGG-GUCGccu -5'
19734 3' -60.8 NC_004687.1 + 23748 0.72 0.374483
Target:  5'- uUCU-GCGCAGCgccgACCUGGCCCAggccgucaagguccuGCGGu -3'
miRNA:   3'- -AGAgUGCGUCG----UGGACCGGGU---------------CGCCu -5'
19734 3' -60.8 NC_004687.1 + 78295 0.71 0.409757
Target:  5'- uUC-CA-GCAGCGuCCguccuggggcacggUGGCCCAGCGGAu -3'
miRNA:   3'- -AGaGUgCGUCGU-GG--------------ACCGGGUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.