miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19735 3' -55 NC_004687.1 + 150042 1.09 0.003783
Target:  5'- aACGUUCUCCAGGGCCUUGGUCAUCGGc -3'
miRNA:   3'- -UGCAAGAGGUCCCGGAACCAGUAGCC- -5'
19735 3' -55 NC_004687.1 + 122006 0.8 0.289146
Target:  5'- gACGUUCUCaGGGGCucCUUGGUCAacUCGGu -3'
miRNA:   3'- -UGCAAGAGgUCCCG--GAACCAGU--AGCC- -5'
19735 3' -55 NC_004687.1 + 119195 0.76 0.439295
Target:  5'- gGCGgUCUugcCCGGGGCCUgcgGGcCAUCGGc -3'
miRNA:   3'- -UGCaAGA---GGUCCCGGAa--CCaGUAGCC- -5'
19735 3' -55 NC_004687.1 + 1473 0.72 0.655627
Target:  5'- cGCGUUCUgCGGGGU---GGUCGUCGa -3'
miRNA:   3'- -UGCAAGAgGUCCCGgaaCCAGUAGCc -5'
19735 3' -55 NC_004687.1 + 89606 0.72 0.664797
Target:  5'- -aGUUCUcguugagCCAGGGCCcgccGGUCGUCGa -3'
miRNA:   3'- ugCAAGA-------GGUCCCGGaa--CCAGUAGCc -5'
19735 3' -55 NC_004687.1 + 142036 0.72 0.665814
Target:  5'- cCGaUCUCCAGGaCCa-GGUCGUCGGu -3'
miRNA:   3'- uGCaAGAGGUCCcGGaaCCAGUAGCC- -5'
19735 3' -55 NC_004687.1 + 21475 0.72 0.665814
Target:  5'- gGCGgUCUCCAGGGCCUUG-----CGGg -3'
miRNA:   3'- -UGCaAGAGGUCCCGGAACcaguaGCC- -5'
19735 3' -55 NC_004687.1 + 78247 0.72 0.675975
Target:  5'- cGCGcUCUCCAGGGCgUUGaGUC--CGGc -3'
miRNA:   3'- -UGCaAGAGGUCCCGgAAC-CAGuaGCC- -5'
19735 3' -55 NC_004687.1 + 92990 0.71 0.735874
Target:  5'- uCGUUCUCCAuaGCCUc-GUCGUCGGa -3'
miRNA:   3'- uGCAAGAGGUccCGGAacCAGUAGCC- -5'
19735 3' -55 NC_004687.1 + 102224 0.71 0.745596
Target:  5'- gACGUcCUugcCCAGGGUCUUGGgaccgCAggUCGGg -3'
miRNA:   3'- -UGCAaGA---GGUCCCGGAACCa----GU--AGCC- -5'
19735 3' -55 NC_004687.1 + 7672 0.71 0.755219
Target:  5'- cACGUagUCCAGGGUg-UGGUCGggaaaguccUCGGg -3'
miRNA:   3'- -UGCAagAGGUCCCGgaACCAGU---------AGCC- -5'
19735 3' -55 NC_004687.1 + 35899 0.71 0.755219
Target:  5'- cCGUUCUCCAGcGCCggaUGGUCGUa-- -3'
miRNA:   3'- uGCAAGAGGUCcCGGa--ACCAGUAgcc -5'
19735 3' -55 NC_004687.1 + 97333 0.71 0.755219
Target:  5'- -aGUaCUCCGgcGGGaCCUgGGUCGUCGGc -3'
miRNA:   3'- ugCAaGAGGU--CCC-GGAaCCAGUAGCC- -5'
19735 3' -55 NC_004687.1 + 105030 0.7 0.764733
Target:  5'- gACGUUCUCCGGGGUCac-GcCcUCGGg -3'
miRNA:   3'- -UGCAAGAGGUCCCGGaacCaGuAGCC- -5'
19735 3' -55 NC_004687.1 + 134998 0.7 0.783401
Target:  5'- gACGUUCaccgccUCCAGGGCCUcgaugcgcgccUGcaCGUCGGc -3'
miRNA:   3'- -UGCAAG------AGGUCCCGGA-----------ACcaGUAGCC- -5'
19735 3' -55 NC_004687.1 + 129433 0.7 0.801527
Target:  5'- gACGaUCgcaCgCAGGGCCaggUGGUCGUgGGg -3'
miRNA:   3'- -UGCaAGa--G-GUCCCGGa--ACCAGUAgCC- -5'
19735 3' -55 NC_004687.1 + 91980 0.69 0.819042
Target:  5'- gGCGUUCUCguGGGUgUUGGcCugAUCGa -3'
miRNA:   3'- -UGCAAGAGguCCCGgAACCaG--UAGCc -5'
19735 3' -55 NC_004687.1 + 91861 0.69 0.83588
Target:  5'- ---aUCUCCAGGGCCUUGuugaUgAUCGa -3'
miRNA:   3'- ugcaAGAGGUCCCGGAACc---AgUAGCc -5'
19735 3' -55 NC_004687.1 + 141896 0.68 0.867284
Target:  5'- uGCGgauggUCUCCucggcacGGGCCUUGGccugcUCA-CGGg -3'
miRNA:   3'- -UGCa----AGAGGu------CCCGGAACC-----AGUaGCC- -5'
19735 3' -55 NC_004687.1 + 60812 0.68 0.867284
Target:  5'- gUGUaCUCCGGGGCCU-GGUgc-CGGa -3'
miRNA:   3'- uGCAaGAGGUCCCGGAaCCAguaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.