Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19735 | 3' | -55 | NC_004687.1 | + | 1473 | 0.72 | 0.655627 |
Target: 5'- cGCGUUCUgCGGGGU---GGUCGUCGa -3' miRNA: 3'- -UGCAAGAgGUCCCGgaaCCAGUAGCc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 7672 | 0.71 | 0.755219 |
Target: 5'- cACGUagUCCAGGGUg-UGGUCGggaaaguccUCGGg -3' miRNA: 3'- -UGCAagAGGUCCCGgaACCAGU---------AGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 8016 | 0.66 | 0.949187 |
Target: 5'- cCGcUCgUCCGGGGugcCCUUGGg-GUCGGg -3' miRNA: 3'- uGCaAG-AGGUCCC---GGAACCagUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 17177 | 0.66 | 0.944865 |
Target: 5'- gGCG-UCgagcuugccgUCCAGGGCCUcGGUCAg--- -3' miRNA: 3'- -UGCaAG----------AGGUCCCGGAaCCAGUagcc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 20375 | 0.67 | 0.925219 |
Target: 5'- uGCGg---CCAGGGCCagcGGUaggcCAUCGGc -3' miRNA: 3'- -UGCaagaGGUCCCGGaa-CCA----GUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 20498 | 0.67 | 0.918015 |
Target: 5'- uCGUUCUuccggucggCCAGGGCCUgcaucaUGGacccggccucgaucUCGUUGGg -3' miRNA: 3'- uGCAAGA---------GGUCCCGGA------ACC--------------AGUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 21475 | 0.72 | 0.665814 |
Target: 5'- gGCGgUCUCCAGGGCCUUG-----CGGg -3' miRNA: 3'- -UGCaAGAGGUCCCGGAACcaguaGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 29136 | 0.67 | 0.901773 |
Target: 5'- gACGggCcCgCAGGGCaguCUUGGUCAUCa- -3' miRNA: 3'- -UGCaaGaG-GUCCCG---GAACCAGUAGcc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 31109 | 0.67 | 0.919713 |
Target: 5'- gACGggcaCUCCAGcGGCgaaGGUUGUCGGg -3' miRNA: 3'- -UGCaa--GAGGUC-CCGgaaCCAGUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 35899 | 0.71 | 0.755219 |
Target: 5'- cCGUUCUCCAGcGCCggaUGGUCGUa-- -3' miRNA: 3'- uGCAAGAGGUCcCGGa--ACCAGUAgcc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 53971 | 0.67 | 0.901773 |
Target: 5'- cCGaUUCUCCGGccuGGCCUccGGUCGUCu- -3' miRNA: 3'- uGC-AAGAGGUC---CCGGAa-CCAGUAGcc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 56949 | 0.65 | 0.953278 |
Target: 5'- cCGgcuuggCCGGGccacgaGCCUUGGUUGUCGGc -3' miRNA: 3'- uGCaaga--GGUCC------CGGAACCAGUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 60812 | 0.68 | 0.867284 |
Target: 5'- gUGUaCUCCGGGGCCU-GGUgc-CGGa -3' miRNA: 3'- uGCAaGAGGUCCCGGAaCCAguaGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 65148 | 0.66 | 0.930487 |
Target: 5'- aACGUcUUCCGGGGCUUcuaUGGcCAgccCGGc -3' miRNA: 3'- -UGCAaGAGGUCCCGGA---ACCaGUa--GCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 67666 | 0.65 | 0.952478 |
Target: 5'- cGCGUUgUCCAGGGUggUGGacgggaccacgcCGUUGGg -3' miRNA: 3'- -UGCAAgAGGUCCCGgaACCa-----------GUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 78247 | 0.72 | 0.675975 |
Target: 5'- cGCGcUCUCCAGGGCgUUGaGUC--CGGc -3' miRNA: 3'- -UGCaAGAGGUCCCGgAAC-CAGuaGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 78617 | 0.65 | 0.953278 |
Target: 5'- gGCGaguagaCCAGGGUCUUGGcCGgaggCGGg -3' miRNA: 3'- -UGCaaga--GGUCCCGGAACCaGUa---GCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 82917 | 0.67 | 0.919713 |
Target: 5'- gACGc-CUCCAGGGCCgaaaggccaaUGG-CAUCGu -3' miRNA: 3'- -UGCaaGAGGUCCCGGa---------ACCaGUAGCc -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 83682 | 0.67 | 0.919713 |
Target: 5'- gGCGgUCUCC-GGGC--UGGaacaUCAUCGGg -3' miRNA: 3'- -UGCaAGAGGuCCCGgaACC----AGUAGCC- -5' |
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19735 | 3' | -55 | NC_004687.1 | + | 89606 | 0.72 | 0.664797 |
Target: 5'- -aGUUCUcguugagCCAGGGCCcgccGGUCGUCGa -3' miRNA: 3'- ugCAAGA-------GGUCCCGGaa--CCAGUAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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