miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19735 5' -58.5 NC_004687.1 + 150076 1.08 0.002138
Target:  5'- aCUCCGGUCACCUGAGCCGGACUGACGu -3'
miRNA:   3'- -GAGGCCAGUGGACUCGGCCUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 17252 0.82 0.126292
Target:  5'- uUCCGGgCACCUGGGCuCGGACcGACGa -3'
miRNA:   3'- gAGGCCaGUGGACUCG-GCCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 107961 0.79 0.197357
Target:  5'- gCUUCGGUCGgCUGGGCCGGAuCUGGgGa -3'
miRNA:   3'- -GAGGCCAGUgGACUCGGCCU-GACUgC- -5'
19735 5' -58.5 NC_004687.1 + 96036 0.75 0.351267
Target:  5'- cCUCCGGUCACCcagUGGGCCaGGGCUcuuCGu -3'
miRNA:   3'- -GAGGCCAGUGG---ACUCGG-CCUGAcu-GC- -5'
19735 5' -58.5 NC_004687.1 + 146441 0.73 0.42432
Target:  5'- -aCCGGgCGCCUGAugaccgacacGCCGGACUGGUGg -3'
miRNA:   3'- gaGGCCaGUGGACU----------CGGCCUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 107761 0.73 0.441748
Target:  5'- -gCCGGUCAUCggacGGGCCGGGggGGCGg -3'
miRNA:   3'- gaGGCCAGUGGa---CUCGGCCUgaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 39528 0.72 0.496325
Target:  5'- cCUCCGGUggccccggCGCCUGGcgucGCCGGGCcgGGCa -3'
miRNA:   3'- -GAGGCCA--------GUGGACU----CGGCCUGa-CUGc -5'
19735 5' -58.5 NC_004687.1 + 138701 0.71 0.524735
Target:  5'- gCUCCGG-CGgC-GAGCUGGACaUGACGa -3'
miRNA:   3'- -GAGGCCaGUgGaCUCGGCCUG-ACUGC- -5'
19735 5' -58.5 NC_004687.1 + 44573 0.71 0.534344
Target:  5'- gUgCGGUCGCCgcgcugGGGCCGGACcaGCGg -3'
miRNA:   3'- gAgGCCAGUGGa-----CUCGGCCUGacUGC- -5'
19735 5' -58.5 NC_004687.1 + 56739 0.71 0.544015
Target:  5'- uCUCgCGGUCuCCgcagGAGCUGG-CUGACa -3'
miRNA:   3'- -GAG-GCCAGuGGa---CUCGGCCuGACUGc -5'
19735 5' -58.5 NC_004687.1 + 107602 0.71 0.572359
Target:  5'- -aCCGacCACCUGAcccuuguGCCGGACUGACc -3'
miRNA:   3'- gaGGCcaGUGGACU-------CGGCCUGACUGc -5'
19735 5' -58.5 NC_004687.1 + 69330 0.71 0.573344
Target:  5'- gUgCGGUCACC-GAcGCCGGAgaGAUGg -3'
miRNA:   3'- gAgGCCAGUGGaCU-CGGCCUgaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 65052 0.7 0.61297
Target:  5'- -cUCGGUCGCCUGGGCCacccaGCUGcGCGg -3'
miRNA:   3'- gaGGCCAGUGGACUCGGcc---UGAC-UGC- -5'
19735 5' -58.5 NC_004687.1 + 18010 0.7 0.61297
Target:  5'- gCUCUGGUCgGCCUGcuGUCGG-UUGACGa -3'
miRNA:   3'- -GAGGCCAG-UGGACu-CGGCCuGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 102435 0.7 0.61297
Target:  5'- gCUCCuGGUagCGCCUGAGUCGGG-UGGCc -3'
miRNA:   3'- -GAGG-CCA--GUGGACUCGGCCUgACUGc -5'
19735 5' -58.5 NC_004687.1 + 29099 0.7 0.61297
Target:  5'- aUCUgGGUCugCUGcaGGCCGGACaagUGAUGg -3'
miRNA:   3'- gAGG-CCAGugGAC--UCGGCCUG---ACUGC- -5'
19735 5' -58.5 NC_004687.1 + 76442 0.69 0.652811
Target:  5'- gUCCGGUCgAUCcGGGCUGGACcucgGACu -3'
miRNA:   3'- gAGGCCAG-UGGaCUCGGCCUGa---CUGc -5'
19735 5' -58.5 NC_004687.1 + 22758 0.69 0.662751
Target:  5'- -aCCGG-CGCCgUGgucgagcuGGCCGcGACUGACGa -3'
miRNA:   3'- gaGGCCaGUGG-AC--------UCGGC-CUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 43403 0.69 0.672668
Target:  5'- -aCCGG-CACUgcuGCCGGACUcGGCGa -3'
miRNA:   3'- gaGGCCaGUGGacuCGGCCUGA-CUGC- -5'
19735 5' -58.5 NC_004687.1 + 106598 0.69 0.681566
Target:  5'- gCUCUGGUCGCCcGAGUccaccaaCGGACccucGGCGa -3'
miRNA:   3'- -GAGGCCAGUGGaCUCG-------GCCUGa---CUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.