miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19735 5' -58.5 NC_004687.1 + 1111 0.69 0.692399
Target:  5'- gUCCGGgCGCCcGGGCCgaucuGGACaGGCGg -3'
miRNA:   3'- gAGGCCaGUGGaCUCGG-----CCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 9411 0.68 0.740746
Target:  5'- cCUCgCGGcucUCGCC-GGGCCGGG-UGGCGg -3'
miRNA:   3'- -GAG-GCC---AGUGGaCUCGGCCUgACUGC- -5'
19735 5' -58.5 NC_004687.1 + 11588 0.66 0.845641
Target:  5'- -cUCGGUC-CUUGAGCCGGucauagauCUGcCGg -3'
miRNA:   3'- gaGGCCAGuGGACUCGGCCu-------GACuGC- -5'
19735 5' -58.5 NC_004687.1 + 15368 0.66 0.845641
Target:  5'- -aCCGGUgACaucaUGAGCCGcGAUgGACa -3'
miRNA:   3'- gaGGCCAgUGg---ACUCGGC-CUGaCUGc -5'
19735 5' -58.5 NC_004687.1 + 17252 0.82 0.126292
Target:  5'- uUCCGGgCACCUGGGCuCGGACcGACGa -3'
miRNA:   3'- gAGGCCaGUGGACUCG-GCCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 18010 0.7 0.61297
Target:  5'- gCUCUGGUCgGCCUGcuGUCGG-UUGACGa -3'
miRNA:   3'- -GAGGCCAG-UGGACu-CGGCCuGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 18483 0.66 0.843289
Target:  5'- aCUCCGG-CACCgcccGCCGGuacgcccuggcccuGCUGGCc -3'
miRNA:   3'- -GAGGCCaGUGGacu-CGGCC--------------UGACUGc -5'
19735 5' -58.5 NC_004687.1 + 22758 0.69 0.662751
Target:  5'- -aCCGG-CGCCgUGgucgagcuGGCCGcGACUGACGa -3'
miRNA:   3'- gaGGCCaGUGG-AC--------UCGGC-CUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 29099 0.7 0.61297
Target:  5'- aUCUgGGUCugCUGcaGGCCGGACaagUGAUGg -3'
miRNA:   3'- gAGG-CCAGugGAC--UCGGCCUG---ACUGC- -5'
19735 5' -58.5 NC_004687.1 + 33431 0.67 0.768744
Target:  5'- aCUuuGGUCugUUcGAGgCGGcaGCUGACGc -3'
miRNA:   3'- -GAggCCAGugGA-CUCgGCC--UGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 35541 0.68 0.740746
Target:  5'- gUCCGGUCGCC-GAGCac-AUUGGCGc -3'
miRNA:   3'- gAGGCCAGUGGaCUCGgccUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 39528 0.72 0.496325
Target:  5'- cCUCCGGUggccccggCGCCUGGcgucGCCGGGCcgGGCa -3'
miRNA:   3'- -GAGGCCA--------GUGGACU----CGGCCUGa-CUGc -5'
19735 5' -58.5 NC_004687.1 + 43148 0.68 0.702197
Target:  5'- -gCCGGUgcUGCCgGAGCCGGuGCUGcCGg -3'
miRNA:   3'- gaGGCCA--GUGGaCUCGGCC-UGACuGC- -5'
19735 5' -58.5 NC_004687.1 + 43403 0.69 0.672668
Target:  5'- -aCCGG-CACUgcuGCCGGACUcGGCGa -3'
miRNA:   3'- gaGGCCaGUGGacuCGGCCUGA-CUGC- -5'
19735 5' -58.5 NC_004687.1 + 44573 0.71 0.534344
Target:  5'- gUgCGGUCGCCgcgcugGGGCCGGACcaGCGg -3'
miRNA:   3'- gAgGCCAGUGGa-----CUCGGCCUGacUGC- -5'
19735 5' -58.5 NC_004687.1 + 56739 0.71 0.544015
Target:  5'- uCUCgCGGUCuCCgcagGAGCUGG-CUGACa -3'
miRNA:   3'- -GAG-GCCAGuGGa---CUCGGCCuGACUGc -5'
19735 5' -58.5 NC_004687.1 + 58695 0.66 0.829657
Target:  5'- -gCCGGUC----GAGCCGGGCUGGg- -3'
miRNA:   3'- gaGGCCAGuggaCUCGGCCUGACUgc -5'
19735 5' -58.5 NC_004687.1 + 60816 0.69 0.682553
Target:  5'- aCUCCGGg-GCCUGGuGCCGGAggGAgGu -3'
miRNA:   3'- -GAGGCCagUGGACU-CGGCCUgaCUgC- -5'
19735 5' -58.5 NC_004687.1 + 60986 0.67 0.759515
Target:  5'- cCUCCGGU--CCUG-GCUGGAUggccagGGCGg -3'
miRNA:   3'- -GAGGCCAguGGACuCGGCCUGa-----CUGC- -5'
19735 5' -58.5 NC_004687.1 + 65052 0.7 0.61297
Target:  5'- -cUCGGUCGCCUGGGCCacccaGCUGcGCGg -3'
miRNA:   3'- gaGGCCAGUGGACUCGGcc---UGAC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.