miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19736 3' -54.9 NC_004687.1 + 1851 0.71 0.75004
Target:  5'- uGCCuGGAACAggGCCAGGUC-C-CCGg -3'
miRNA:   3'- -CGGcUCUUGUa-CGGUCCAGaGaGGCg -5'
19736 3' -54.9 NC_004687.1 + 6091 0.67 0.904916
Target:  5'- cCCGAcGGGCGUacucggGCCAGGaggccUCUgcCUCCGCg -3'
miRNA:   3'- cGGCU-CUUGUA------CGGUCC-----AGA--GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 11261 0.66 0.939909
Target:  5'- gGCCGGGAuagcugcccugcccgGCGUGCCAGG-CgauaCCGa -3'
miRNA:   3'- -CGGCUCU---------------UGUACGGUCCaGaga-GGCg -5'
19736 3' -54.9 NC_004687.1 + 11304 0.67 0.922536
Target:  5'- cCCGGacGAGgAUGcCCAGGUCgcugggaagguUCUCCGUu -3'
miRNA:   3'- cGGCU--CUUgUAC-GGUCCAG-----------AGAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 15700 0.67 0.911027
Target:  5'- cGCCGAGGugGccaCCAGGUCggcacgCUGCu -3'
miRNA:   3'- -CGGCUCUugUac-GGUCCAGaga---GGCG- -5'
19736 3' -54.9 NC_004687.1 + 15725 0.66 0.951343
Target:  5'- cGCCGAGGccaacggcuggACccGCCGGGUUgaaagC-CCGUg -3'
miRNA:   3'- -CGGCUCU-----------UGuaCGGUCCAGa----GaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 15746 0.66 0.946699
Target:  5'- uCCGAGAGCAgguucugcacgucUGCCGGGcuggcCUUgcCCGCc -3'
miRNA:   3'- cGGCUCUUGU-------------ACGGUCCa----GAGa-GGCG- -5'
19736 3' -54.9 NC_004687.1 + 15901 0.71 0.75004
Target:  5'- uGCCGAGAggACcacgGUGCC-GGUCUUgCCGUu -3'
miRNA:   3'- -CGGCUCU--UG----UACGGuCCAGAGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 16631 0.66 0.938008
Target:  5'- gGCUGAGcGCG-GUCAGGUCa--CCGCu -3'
miRNA:   3'- -CGGCUCuUGUaCGGUCCAGagaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 16793 0.66 0.945383
Target:  5'- cGCCGGGGuccacGCccGCCGGGUCguaguaguagacgCUgCCGUc -3'
miRNA:   3'- -CGGCUCU-----UGuaCGGUCCAGa------------GA-GGCG- -5'
19736 3' -54.9 NC_004687.1 + 20751 0.67 0.922536
Target:  5'- gGCCGAcGACGuUGCCgaAGGUCUCcagCCa- -3'
miRNA:   3'- -CGGCUcUUGU-ACGG--UCCAGAGa--GGcg -5'
19736 3' -54.9 NC_004687.1 + 24232 0.71 0.759634
Target:  5'- cCCGAGAcguccaGCAUGcCCGGGUCg-UCCGg -3'
miRNA:   3'- cGGCUCU------UGUAC-GGUCCAGagAGGCg -5'
19736 3' -54.9 NC_004687.1 + 34907 0.69 0.831567
Target:  5'- cGCCGAGGAacUcgGUCAGG-CUggggcggcaCUCCGCc -3'
miRNA:   3'- -CGGCUCUU--GuaCGGUCCaGA---------GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 35091 0.71 0.720671
Target:  5'- cGCCGccuGGAUcgGCCucGGUCgcucCUCCGCc -3'
miRNA:   3'- -CGGCu--CUUGuaCGGu-CCAGa---GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 35230 0.73 0.61919
Target:  5'- cGCgGGGcugGAUGUGgCAGGUCUCcCCGCg -3'
miRNA:   3'- -CGgCUC---UUGUACgGUCCAGAGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 35745 0.67 0.916901
Target:  5'- aCUGGGAGaCcgGCgAGGUCUaC-CCGCa -3'
miRNA:   3'- cGGCUCUU-GuaCGgUCCAGA-GaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 38948 0.68 0.863446
Target:  5'- cGUCGAGuacgacgaggaGACcgGCCAGGagUacaUCCGCa -3'
miRNA:   3'- -CGGCUC-----------UUGuaCGGUCCagAg--AGGCG- -5'
19736 3' -54.9 NC_004687.1 + 39699 0.66 0.947133
Target:  5'- aGCCG-GGGCAUgGCCAGcaguuugccGUCaaUCUCgGCg -3'
miRNA:   3'- -CGGCuCUUGUA-CGGUC---------CAG--AGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 40560 0.74 0.548197
Target:  5'- cGUCGAGGAU---CgAGGUCUCUCCGUg -3'
miRNA:   3'- -CGGCUCUUGuacGgUCCAGAGAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 41382 0.67 0.916901
Target:  5'- aCCGAGGGCGcucgcccgGCgGGGUCuccagggcgaccUCUUCGCg -3'
miRNA:   3'- cGGCUCUUGUa-------CGgUCCAG------------AGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.