miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19736 3' -54.9 NC_004687.1 + 53274 0.67 0.916901
Target:  5'- cGCCGAGcgcGACGUcCCgcAGGcCUC-CCGCg -3'
miRNA:   3'- -CGGCUC---UUGUAcGG--UCCaGAGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 38948 0.68 0.863446
Target:  5'- cGUCGAGuacgacgaggaGACcgGCCAGGagUacaUCCGCa -3'
miRNA:   3'- -CGGCUC-----------UUGuaCGGUCCagAg--AGGCG- -5'
19736 3' -54.9 NC_004687.1 + 106288 0.68 0.863446
Target:  5'- gGCCGGGGugGaGCCGguGGUCUCgaccaCCGa -3'
miRNA:   3'- -CGGCUCUugUaCGGU--CCAGAGa----GGCg -5'
19736 3' -54.9 NC_004687.1 + 46415 0.68 0.891993
Target:  5'- aGCUGA-AGCAUGCCGaGaCUCUCgGCg -3'
miRNA:   3'- -CGGCUcUUGUACGGUcCaGAGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 155213 0.68 0.891993
Target:  5'- uGCCGAGGACcgcgagAUGUUcaaGGGUCUCgCUGUc -3'
miRNA:   3'- -CGGCUCUUG------UACGG---UCCAGAGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 107037 0.67 0.89857
Target:  5'- cGCCGAcgcucGACGU-CCAGGUCggUCUGCu -3'
miRNA:   3'- -CGGCUc----UUGUAcGGUCCAGagAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 75949 0.67 0.904916
Target:  5'- cGCUGGGAguACAUGCacaAGGUCaacaagUUCCuGCg -3'
miRNA:   3'- -CGGCUCU--UGUACGg--UCCAGa-----GAGG-CG- -5'
19736 3' -54.9 NC_004687.1 + 43883 0.67 0.909218
Target:  5'- uCCGAGcACAUgaagggcaagccgaGCCAGGUCgUCgcucgCCGUa -3'
miRNA:   3'- cGGCUCuUGUA--------------CGGUCCAG-AGa----GGCG- -5'
19736 3' -54.9 NC_004687.1 + 35745 0.67 0.916901
Target:  5'- aCUGGGAGaCcgGCgAGGUCUaC-CCGCa -3'
miRNA:   3'- cGGCUCUU-GuaCGgUCCAGA-GaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 60198 0.69 0.831567
Target:  5'- aCCGAGAACcgGUGCCGcGUCUCgUUCGa -3'
miRNA:   3'- cGGCUCUUG--UACGGUcCAGAG-AGGCg -5'
19736 3' -54.9 NC_004687.1 + 34907 0.69 0.831567
Target:  5'- cGCCGAGGAacUcgGUCAGG-CUggggcggcaCUCCGCc -3'
miRNA:   3'- -CGGCUCUU--GuaCGGUCCaGA---------GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 148501 0.69 0.823126
Target:  5'- cGCCGAGGACG-GCCA-GUCg--CUGCu -3'
miRNA:   3'- -CGGCUCUUGUaCGGUcCAGagaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 82465 0.73 0.61919
Target:  5'- cGCUGAGAucCAcGCCgAGGUCU-UCCGCg -3'
miRNA:   3'- -CGGCUCUu-GUaCGG-UCCAGAgAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 137015 0.73 0.61919
Target:  5'- aGCCGAGAGCAcuuucUGCuCGGGUCcaccCUgCUGCa -3'
miRNA:   3'- -CGGCUCUUGU-----ACG-GUCCAGa---GA-GGCG- -5'
19736 3' -54.9 NC_004687.1 + 124402 0.71 0.720671
Target:  5'- gGCCGAGGcacagaucgccaACAUGCgCcgcgAGGUCUCgcugCUGCa -3'
miRNA:   3'- -CGGCUCU------------UGUACG-G----UCCAGAGa---GGCG- -5'
19736 3' -54.9 NC_004687.1 + 35091 0.71 0.720671
Target:  5'- cGCCGccuGGAUcgGCCucGGUCgcucCUCCGCc -3'
miRNA:   3'- -CGGCu--CUUGuaCGGu-CCAGa---GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 107885 0.71 0.730549
Target:  5'- cCCGAGGugGUGCUcgacgAGGUCga-CCGCg -3'
miRNA:   3'- cGGCUCUugUACGG-----UCCAGagaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 108899 0.71 0.740341
Target:  5'- aGCCGGGGACGUacCCAGucCUCgUCCGCa -3'
miRNA:   3'- -CGGCUCUUGUAc-GGUCcaGAG-AGGCG- -5'
19736 3' -54.9 NC_004687.1 + 1851 0.71 0.75004
Target:  5'- uGCCuGGAACAggGCCAGGUC-C-CCGg -3'
miRNA:   3'- -CGGcUCUUGUa-CGGUCCAGaGaGGCg -5'
19736 3' -54.9 NC_004687.1 + 58391 0.7 0.778475
Target:  5'- aCCGAGGaaagcgGCAaGCCGGGUCUgUUCGa -3'
miRNA:   3'- cGGCUCU------UGUaCGGUCCAGAgAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.