Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19738 | 3' | -56.5 | NC_004687.1 | + | 8616 | 0.69 | 0.722473 |
Target: 5'- -gGCaGUCCAggCCGC-ACCGGGUcGACc -3' miRNA: 3'- uaUG-CAGGUa-GGCGuUGGCCCAcCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 141518 | 0.69 | 0.761339 |
Target: 5'- -aACcaCCAUCgGC-ACCGGGUGGGa -3' miRNA: 3'- uaUGcaGGUAGgCGuUGGCCCACCUg -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 36180 | 0.68 | 0.780123 |
Target: 5'- -gGCGUCguucuuCAcCCGCAagguGCCGGGcUGGACc -3' miRNA: 3'- uaUGCAG------GUaGGCGU----UGGCCC-ACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 139958 | 0.68 | 0.79296 |
Target: 5'- -aGCGUCU-UCgGCAACUGGGUgccgcuggucgcgccGGACg -3' miRNA: 3'- uaUGCAGGuAGgCGUUGGCCCA---------------CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 144261 | 0.67 | 0.824607 |
Target: 5'- -cACG-CCGUCCuCGACCGGGUaGAa -3' miRNA: 3'- uaUGCaGGUAGGcGUUGGCCCAcCUg -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 99349 | 0.68 | 0.807281 |
Target: 5'- -gACGUCgGgcucgCCGCcgccccaguCCGGGUGGAUc -3' miRNA: 3'- uaUGCAGgUa----GGCGuu-------GGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 5934 | 0.68 | 0.807281 |
Target: 5'- -cAUGUCCAUgaUCGCGGCguUGGGUcGGGCg -3' miRNA: 3'- uaUGCAGGUA--GGCGUUG--GCCCA-CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 120008 | 0.68 | 0.780123 |
Target: 5'- -gGCGUCUcgCCGUGGCCGGGg---- -3' miRNA: 3'- uaUGCAGGuaGGCGUUGGCCCaccug -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 14695 | 0.69 | 0.761339 |
Target: 5'- -gGCGcCCAgggUCCGCGcguccaccGCUGGGUGGuCg -3' miRNA: 3'- uaUGCaGGU---AGGCGU--------UGGCCCACCuG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 108446 | 0.69 | 0.755612 |
Target: 5'- ---gGUCCucaggcuugCCGCcuaccgugcaguccuGGCCGGGUGGGCa -3' miRNA: 3'- uaugCAGGua-------GGCG---------------UUGGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 134358 | 0.69 | 0.742098 |
Target: 5'- --uCGUCCAgagccuuggCCGCGcucacgaccGCCGGGcgGGACa -3' miRNA: 3'- uauGCAGGUa--------GGCGU---------UGGCCCa-CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 21274 | 0.67 | 0.825456 |
Target: 5'- -gGCGUaCCAcUCGCGACguucggcaccggugaGGGUGGACa -3' miRNA: 3'- uaUGCA-GGUaGGCGUUGg--------------CCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 13309 | 0.67 | 0.849266 |
Target: 5'- uUGCGcUCgGUCUGCA---GGGUGGGCa -3' miRNA: 3'- uAUGC-AGgUAGGCGUuggCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 14168 | 0.67 | 0.849266 |
Target: 5'- uUGgGUUCAUCCGCAuguagauCCGGGUcuuaGGCa -3' miRNA: 3'- uAUgCAGGUAGGCGUu------GGCCCAc---CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 40838 | 0.67 | 0.857101 |
Target: 5'- -gAUGUCgCcgCCGCugguggccgguGCCgGGGUGGGCg -3' miRNA: 3'- uaUGCAG-GuaGGCGu----------UGG-CCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 90247 | 0.66 | 0.863979 |
Target: 5'- gGUGCGggugCCcggauugAUCCGagccuCCGGGUGGAUc -3' miRNA: 3'- -UAUGCa---GG-------UAGGCguu--GGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 74925 | 0.66 | 0.879362 |
Target: 5'- --uUGUCgGUCgGCGugCGGGUGuucGACa -3' miRNA: 3'- uauGCAGgUAGgCGUugGCCCAC---CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 12245 | 0.66 | 0.886349 |
Target: 5'- --cCGUUgG-CCGCGACCGGG-GuGACg -3' miRNA: 3'- uauGCAGgUaGGCGUUGGCCCaC-CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 124299 | 0.66 | 0.893112 |
Target: 5'- cUugG-CCAUCCcaaacGUGAUCGGGUGGuCg -3' miRNA: 3'- uAugCaGGUAGG-----CGUUGGCCCACCuG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 149085 | 1.07 | 0.003324 |
Target: 5'- aAUACGUCCAUCCGCAACCGGGUGGACu -3' miRNA: 3'- -UAUGCAGGUAGGCGUUGGCCCACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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