miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 3' -56.5 NC_004687.1 + 135865 0.66 0.879362
Target:  5'- gGUGCGUCUgguggagcaGUCCG-AGCUGGGcccGGGCg -3'
miRNA:   3'- -UAUGCAGG---------UAGGCgUUGGCCCa--CCUG- -5'
19738 3' -56.5 NC_004687.1 + 24594 0.67 0.816028
Target:  5'- -cGCGgCCAacgagcuggUCCGCAGCCaGGUcaaGGACg -3'
miRNA:   3'- uaUGCaGGU---------AGGCGUUGGcCCA---CCUG- -5'
19738 3' -56.5 NC_004687.1 + 22670 0.67 0.824607
Target:  5'- -gGCGUUCucgGUCCGCGaggaccucgaacACCGGGUcGGCg -3'
miRNA:   3'- uaUGCAGG---UAGGCGU------------UGGCCCAcCUG- -5'
19738 3' -56.5 NC_004687.1 + 74845 0.67 0.849266
Target:  5'- -gACGUCaGUCgGcCAACCGGGcgauccUGGGCu -3'
miRNA:   3'- uaUGCAGgUAGgC-GUUGGCCC------ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 39724 0.66 0.863979
Target:  5'- -aGCGUCCggcggaGUCCGaCGAcaaccauCCGGGUGG-Ca -3'
miRNA:   3'- uaUGCAGG------UAGGC-GUU-------GGCCCACCuG- -5'
19738 3' -56.5 NC_004687.1 + 64522 0.66 0.864733
Target:  5'- cUACGUCCGggCgGCGcugACCuGGUGGAa -3'
miRNA:   3'- uAUGCAGGUa-GgCGU---UGGcCCACCUg -5'
19738 3' -56.5 NC_004687.1 + 18137 0.66 0.865485
Target:  5'- cUGCGUCUcaacaucaacgacaCCGguGCCGGuGUGGGCc -3'
miRNA:   3'- uAUGCAGGua------------GGCguUGGCC-CACCUG- -5'
19738 3' -56.5 NC_004687.1 + 117965 0.66 0.872155
Target:  5'- -gACGUCaaccaGUCCGguGCCGGGUucACc -3'
miRNA:   3'- uaUGCAGg----UAGGCguUGGCCCAccUG- -5'
19738 3' -56.5 NC_004687.1 + 17761 0.66 0.872155
Target:  5'- gGUGCuUCCA-CUGCGGCaaGGUGGGCu -3'
miRNA:   3'- -UAUGcAGGUaGGCGUUGgcCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 123142 0.68 0.807281
Target:  5'- ---aGUCgGgaccCCGCAACUGGGacUGGACg -3'
miRNA:   3'- uaugCAGgUa---GGCGUUGGCCC--ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 139958 0.68 0.79296
Target:  5'- -aGCGUCU-UCgGCAACUGGGUgccgcuggucgcgccGGACg -3'
miRNA:   3'- uaUGCAGGuAGgCGUUGGCCCA---------------CCUG- -5'
19738 3' -56.5 NC_004687.1 + 36180 0.68 0.780123
Target:  5'- -gGCGUCguucuuCAcCCGCAagguGCCGGGcUGGACc -3'
miRNA:   3'- uaUGCAG------GUaGGCGU----UGGCCC-ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 123958 0.77 0.306892
Target:  5'- -cGCGgUCAUCCGCGACCaGGUGGAg -3'
miRNA:   3'- uaUGCaGGUAGGCGUUGGcCCACCUg -5'
19738 3' -56.5 NC_004687.1 + 871 0.74 0.444689
Target:  5'- cUACGUCCAUCCGCuggGCCaGGUGcuGCg -3'
miRNA:   3'- uAUGCAGGUAGGCGu--UGGcCCACc-UG- -5'
19738 3' -56.5 NC_004687.1 + 43627 0.73 0.510655
Target:  5'- gAUGCGUCUgcgCCGCGaggGCCGGGUgcaugucaaGGACg -3'
miRNA:   3'- -UAUGCAGGua-GGCGU---UGGCCCA---------CCUG- -5'
19738 3' -56.5 NC_004687.1 + 93067 0.72 0.540168
Target:  5'- --uCGaUCCGUCCGaCAuCUGGGUGGGCc -3'
miRNA:   3'- uauGC-AGGUAGGC-GUuGGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 45863 0.69 0.710544
Target:  5'- -gACGgucgagCCgguggugGUCCGCGAgcagcguCCGGGUGGGCg -3'
miRNA:   3'- uaUGCa-----GG-------UAGGCGUU-------GGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 138822 0.69 0.712539
Target:  5'- cAUGCGUCCGccggugacgaUCCGCuggcGCCGGa-GGACa -3'
miRNA:   3'- -UAUGCAGGU----------AGGCGu---UGGCCcaCCUG- -5'
19738 3' -56.5 NC_004687.1 + 8616 0.69 0.722473
Target:  5'- -gGCaGUCCAggCCGC-ACCGGGUcGACc -3'
miRNA:   3'- uaUG-CAGGUa-GGCGuUGGCCCAcCUG- -5'
19738 3' -56.5 NC_004687.1 + 141518 0.69 0.761339
Target:  5'- -aACcaCCAUCgGC-ACCGGGUGGGa -3'
miRNA:   3'- uaUGcaGGUAGgCGuUGGCCCACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.