Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19738 | 3' | -56.5 | NC_004687.1 | + | 149085 | 1.07 | 0.003324 |
Target: 5'- aAUACGUCCAUCCGCAACCGGGUGGACu -3' miRNA: 3'- -UAUGCAGGUAGGCGUUGGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 121094 | 0.8 | 0.197741 |
Target: 5'- aGUAUGUCgaccggacccaccaCGUCCGgGGCCGGGUGGACu -3' miRNA: 3'- -UAUGCAG--------------GUAGGCgUUGGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 123958 | 0.77 | 0.306892 |
Target: 5'- -cGCGgUCAUCCGCGACCaGGUGGAg -3' miRNA: 3'- uaUGCaGGUAGGCGUUGGcCCACCUg -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 871 | 0.74 | 0.444689 |
Target: 5'- cUACGUCCAUCCGCuggGCCaGGUGcuGCg -3' miRNA: 3'- uAUGCAGGUAGGCGu--UGGcCCACc-UG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 43627 | 0.73 | 0.510655 |
Target: 5'- gAUGCGUCUgcgCCGCGaggGCCGGGUgcaugucaaGGACg -3' miRNA: 3'- -UAUGCAGGua-GGCGU---UGGCCCA---------CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 93067 | 0.72 | 0.540168 |
Target: 5'- --uCGaUCCGUCCGaCAuCUGGGUGGGCc -3' miRNA: 3'- uauGC-AGGUAGGC-GUuGGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 105420 | 0.72 | 0.540168 |
Target: 5'- -aACGagCGUCCGCuucuGGCCGGGauUGGACg -3' miRNA: 3'- uaUGCagGUAGGCG----UUGGCCC--ACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 135307 | 0.7 | 0.67221 |
Target: 5'- -gAUGUCgGUCaC-CAGCCGGGUGGcACg -3' miRNA: 3'- uaUGCAGgUAG-GcGUUGGCCCACC-UG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 45863 | 0.69 | 0.710544 |
Target: 5'- -gACGgucgagCCgguggugGUCCGCGAgcagcguCCGGGUGGGCg -3' miRNA: 3'- uaUGCa-----GG-------UAGGCGUU-------GGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 138822 | 0.69 | 0.712539 |
Target: 5'- cAUGCGUCCGccggugacgaUCCGCuggcGCCGGa-GGACa -3' miRNA: 3'- -UAUGCAGGU----------AGGCGu---UGGCCcaCCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 8616 | 0.69 | 0.722473 |
Target: 5'- -gGCaGUCCAggCCGC-ACCGGGUcGACc -3' miRNA: 3'- uaUG-CAGGUa-GGCGuUGGCCCAcCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 134358 | 0.69 | 0.742098 |
Target: 5'- --uCGUCCAgagccuuggCCGCGcucacgaccGCCGGGcgGGACa -3' miRNA: 3'- uauGCAGGUa--------GGCGU---------UGGCCCa-CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 108446 | 0.69 | 0.755612 |
Target: 5'- ---gGUCCucaggcuugCCGCcuaccgugcaguccuGGCCGGGUGGGCa -3' miRNA: 3'- uaugCAGGua-------GGCG---------------UUGGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 14695 | 0.69 | 0.761339 |
Target: 5'- -gGCGcCCAgggUCCGCGcguccaccGCUGGGUGGuCg -3' miRNA: 3'- uaUGCaGGU---AGGCGU--------UGGCCCACCuG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 141518 | 0.69 | 0.761339 |
Target: 5'- -aACcaCCAUCgGC-ACCGGGUGGGa -3' miRNA: 3'- uaUGcaGGUAGgCGuUGGCCCACCUg -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 36180 | 0.68 | 0.780123 |
Target: 5'- -gGCGUCguucuuCAcCCGCAagguGCCGGGcUGGACc -3' miRNA: 3'- uaUGCAG------GUaGGCGU----UGGCCC-ACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 120008 | 0.68 | 0.780123 |
Target: 5'- -gGCGUCUcgCCGUGGCCGGGg---- -3' miRNA: 3'- uaUGCAGGuaGGCGUUGGCCCaccug -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 139958 | 0.68 | 0.79296 |
Target: 5'- -aGCGUCU-UCgGCAACUGGGUgccgcuggucgcgccGGACg -3' miRNA: 3'- uaUGCAGGuAGgCGUUGGCCCA---------------CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 123142 | 0.68 | 0.807281 |
Target: 5'- ---aGUCgGgaccCCGCAACUGGGacUGGACg -3' miRNA: 3'- uaugCAGgUa---GGCGUUGGCCC--ACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 5934 | 0.68 | 0.807281 |
Target: 5'- -cAUGUCCAUgaUCGCGGCguUGGGUcGGGCg -3' miRNA: 3'- uaUGCAGGUA--GGCGUUG--GCCCA-CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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