Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19738 | 3' | -56.5 | NC_004687.1 | + | 871 | 0.74 | 0.444689 |
Target: 5'- cUACGUCCAUCCGCuggGCCaGGUGcuGCg -3' miRNA: 3'- uAUGCAGGUAGGCGu--UGGcCCACc-UG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 5934 | 0.68 | 0.807281 |
Target: 5'- -cAUGUCCAUgaUCGCGGCguUGGGUcGGGCg -3' miRNA: 3'- uaUGCAGGUA--GGCGUUG--GCCCA-CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 8616 | 0.69 | 0.722473 |
Target: 5'- -gGCaGUCCAggCCGC-ACCGGGUcGACc -3' miRNA: 3'- uaUG-CAGGUa-GGCGuUGGCCCAcCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 12245 | 0.66 | 0.886349 |
Target: 5'- --cCGUUgG-CCGCGACCGGG-GuGACg -3' miRNA: 3'- uauGCAGgUaGGCGUUGGCCCaC-CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 13309 | 0.67 | 0.849266 |
Target: 5'- uUGCGcUCgGUCUGCA---GGGUGGGCa -3' miRNA: 3'- uAUGC-AGgUAGGCGUuggCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 14168 | 0.67 | 0.849266 |
Target: 5'- uUGgGUUCAUCCGCAuguagauCCGGGUcuuaGGCa -3' miRNA: 3'- uAUgCAGGUAGGCGUu------GGCCCAc---CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 14695 | 0.69 | 0.761339 |
Target: 5'- -gGCGcCCAgggUCCGCGcguccaccGCUGGGUGGuCg -3' miRNA: 3'- uaUGCaGGU---AGGCGU--------UGGCCCACCuG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 17761 | 0.66 | 0.872155 |
Target: 5'- gGUGCuUCCA-CUGCGGCaaGGUGGGCu -3' miRNA: 3'- -UAUGcAGGUaGGCGUUGgcCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 18137 | 0.66 | 0.865485 |
Target: 5'- cUGCGUCUcaacaucaacgacaCCGguGCCGGuGUGGGCc -3' miRNA: 3'- uAUGCAGGua------------GGCguUGGCC-CACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 21274 | 0.67 | 0.825456 |
Target: 5'- -gGCGUaCCAcUCGCGACguucggcaccggugaGGGUGGACa -3' miRNA: 3'- uaUGCA-GGUaGGCGUUGg--------------CCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 22670 | 0.67 | 0.824607 |
Target: 5'- -gGCGUUCucgGUCCGCGaggaccucgaacACCGGGUcGGCg -3' miRNA: 3'- uaUGCAGG---UAGGCGU------------UGGCCCAcCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 24594 | 0.67 | 0.816028 |
Target: 5'- -cGCGgCCAacgagcuggUCCGCAGCCaGGUcaaGGACg -3' miRNA: 3'- uaUGCaGGU---------AGGCGUUGGcCCA---CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 30570 | 0.66 | 0.886349 |
Target: 5'- ---aGUCaAUCCGUggUCGGGUGGu- -3' miRNA: 3'- uaugCAGgUAGGCGuuGGCCCACCug -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 36180 | 0.68 | 0.780123 |
Target: 5'- -gGCGUCguucuuCAcCCGCAagguGCCGGGcUGGACc -3' miRNA: 3'- uaUGCAG------GUaGGCGU----UGGCCC-ACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 39724 | 0.66 | 0.863979 |
Target: 5'- -aGCGUCCggcggaGUCCGaCGAcaaccauCCGGGUGG-Ca -3' miRNA: 3'- uaUGCAGG------UAGGC-GUU-------GGCCCACCuG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 40838 | 0.67 | 0.857101 |
Target: 5'- -gAUGUCgCcgCCGCugguggccgguGCCgGGGUGGGCg -3' miRNA: 3'- uaUGCAG-GuaGGCGu----------UGG-CCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 43627 | 0.73 | 0.510655 |
Target: 5'- gAUGCGUCUgcgCCGCGaggGCCGGGUgcaugucaaGGACg -3' miRNA: 3'- -UAUGCAGGua-GGCGU---UGGCCCA---------CCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 45863 | 0.69 | 0.710544 |
Target: 5'- -gACGgucgagCCgguggugGUCCGCGAgcagcguCCGGGUGGGCg -3' miRNA: 3'- uaUGCa-----GG-------UAGGCGUU-------GGCCCACCUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 59540 | 0.66 | 0.899646 |
Target: 5'- -gACGaCCAUCC-CGGCaCGGGUGaccGACg -3' miRNA: 3'- uaUGCaGGUAGGcGUUG-GCCCAC---CUG- -5' |
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19738 | 3' | -56.5 | NC_004687.1 | + | 60765 | 0.66 | 0.893112 |
Target: 5'- cGUACGUCUucaaCgGCu-CCGGuGUGGGCa -3' miRNA: 3'- -UAUGCAGGua--GgCGuuGGCC-CACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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