miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 3' -53.4 NC_004687.1 + 575 0.68 0.931659
Target:  5'- aGUCCcggaucGAUCGGCGGCaGGCUCa-- -3'
miRNA:   3'- gCAGGaa----CUAGCCGUCGgUUGAGacc -5'
19743 3' -53.4 NC_004687.1 + 11245 0.68 0.915091
Target:  5'- gCGUCgUUGGUCGGCAGgCCGGgauagCUGc -3'
miRNA:   3'- -GCAGgAACUAGCCGUC-GGUUga---GACc -5'
19743 3' -53.4 NC_004687.1 + 11543 0.67 0.941484
Target:  5'- gGUCCggggcggUGAUCGGCGGCgGAgUa-GGa -3'
miRNA:   3'- gCAGGa------ACUAGCCGUCGgUUgAgaCC- -5'
19743 3' -53.4 NC_004687.1 + 13354 0.72 0.773873
Target:  5'- cCGUCCUcgucGAUCGGCgccacgccauuGGCCAcgGCgcgCUGGg -3'
miRNA:   3'- -GCAGGAa---CUAGCCG-----------UCGGU--UGa--GACC- -5'
19743 3' -53.4 NC_004687.1 + 18715 0.68 0.931659
Target:  5'- gCGcUCCacgauggUGGUgGGCAGCCGguGCUCaUGGu -3'
miRNA:   3'- -GC-AGGa------ACUAgCCGUCGGU--UGAG-ACC- -5'
19743 3' -53.4 NC_004687.1 + 21552 0.7 0.860457
Target:  5'- cCGcCCggcGGUCGugagcGCGGCCAagGCUCUGGa -3'
miRNA:   3'- -GCaGGaa-CUAGC-----CGUCGGU--UGAGACC- -5'
19743 3' -53.4 NC_004687.1 + 21578 0.68 0.935208
Target:  5'- uCGUCCcaGcgCGGCAGCCAguuccacgacagguGCUCg-- -3'
miRNA:   3'- -GCAGGaaCuaGCCGUCGGU--------------UGAGacc -5'
19743 3' -53.4 NC_004687.1 + 22538 0.69 0.882665
Target:  5'- cCGUCgUUGAgauccaccaUCGGUGGCC-ACUCcGGg -3'
miRNA:   3'- -GCAGgAACU---------AGCCGUCGGuUGAGaCC- -5'
19743 3' -53.4 NC_004687.1 + 34875 0.67 0.961877
Target:  5'- --cCCUUGAUCaGCccGGCCA--UCUGGa -3'
miRNA:   3'- gcaGGAACUAGcCG--UCGGUugAGACC- -5'
19743 3' -53.4 NC_004687.1 + 44828 0.66 0.971404
Target:  5'- --aCCUUGGUguaggCGGCgaucgcGGCCAGCUCgccGGg -3'
miRNA:   3'- gcaGGAACUA-----GCCG------UCGGUUGAGa--CC- -5'
19743 3' -53.4 NC_004687.1 + 44964 0.66 0.965269
Target:  5'- -cUCCUUG-UUGGUGGCCAugUCg-- -3'
miRNA:   3'- gcAGGAACuAGCCGUCGGUugAGacc -5'
19743 3' -53.4 NC_004687.1 + 46642 0.66 0.965269
Target:  5'- gCGggCCUUGAugaagUCGaaGUAGCCGACcgUCUGGc -3'
miRNA:   3'- -GCa-GGAACU-----AGC--CGUCGGUUG--AGACC- -5'
19743 3' -53.4 NC_004687.1 + 47842 0.66 0.971404
Target:  5'- aCGUCCUg---UGGCAGCagaAGCagUGGa -3'
miRNA:   3'- -GCAGGAacuaGCCGUCGg--UUGagACC- -5'
19743 3' -53.4 NC_004687.1 + 48713 0.76 0.530955
Target:  5'- aCGUCCcagaaccGAUCGGCauaGGCCAGCUCgcgGGu -3'
miRNA:   3'- -GCAGGaa-----CUAGCCG---UCGGUUGAGa--CC- -5'
19743 3' -53.4 NC_004687.1 + 78729 0.68 0.931659
Target:  5'- aG-CCcaGAUCGGCAgGCCcuAugUCUGGg -3'
miRNA:   3'- gCaGGaaCUAGCCGU-CGG--UugAGACC- -5'
19743 3' -53.4 NC_004687.1 + 80288 0.68 0.931659
Target:  5'- uGUCuCUcGGcUCGGCGGCgGGCccUCUGGa -3'
miRNA:   3'- gCAG-GAaCU-AGCCGUCGgUUG--AGACC- -5'
19743 3' -53.4 NC_004687.1 + 92728 0.67 0.941484
Target:  5'- gGUCCUggcacagCGGCGGCUcGCcCUGGu -3'
miRNA:   3'- gCAGGAacua---GCCGUCGGuUGaGACC- -5'
19743 3' -53.4 NC_004687.1 + 93916 0.67 0.946034
Target:  5'- cCGUCgCUgGGUCGGUAGCuCAcaccuucuccgcGCUCUGc -3'
miRNA:   3'- -GCAG-GAaCUAGCCGUCG-GU------------UGAGACc -5'
19743 3' -53.4 NC_004687.1 + 94076 0.75 0.591878
Target:  5'- uCGUCCUUGAaccgCaGCAGCCAGggCUGGc -3'
miRNA:   3'- -GCAGGAACUa---GcCGUCGGUUgaGACC- -5'
19743 3' -53.4 NC_004687.1 + 94365 0.66 0.971117
Target:  5'- gGUUgUUGAUCGGCgcccgcagGGCCAacaggucGCUCaGGc -3'
miRNA:   3'- gCAGgAACUAGCCG--------UCGGU-------UGAGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.