Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19743 | 3' | -53.4 | NC_004687.1 | + | 130795 | 0.72 | 0.754722 |
Target: 5'- gCGcCUUUGAggcgcugcaGGCAGCCGACUCggUGGg -3' miRNA: 3'- -GCaGGAACUag-------CCGUCGGUUGAG--ACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 130018 | 0.66 | 0.971689 |
Target: 5'- uGUCaCUUGAaaaugUCGGCAGCCAucaccaugucuccguCUCUu- -3' miRNA: 3'- gCAG-GAACU-----AGCCGUCGGUu--------------GAGAcc -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 47842 | 0.66 | 0.971404 |
Target: 5'- aCGUCCUg---UGGCAGCagaAGCagUGGa -3' miRNA: 3'- -GCAGGAacuaGCCGUCGg--UUGagACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 154681 | 0.66 | 0.968442 |
Target: 5'- gCGUCUg----CGGCAGCuCGACggcCUGGu -3' miRNA: 3'- -GCAGGaacuaGCCGUCG-GUUGa--GACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 107958 | 0.66 | 0.965269 |
Target: 5'- cCGgCUUcGGUCGGCugGGCCGGaUCUGGg -3' miRNA: 3'- -GCaGGAaCUAGCCG--UCGGUUgAGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 120453 | 0.67 | 0.961526 |
Target: 5'- uCGUCCUaccggugcggaucUGGUCGccgaCGGCCAACgcgcccCUGGa -3' miRNA: 3'- -GCAGGA-------------ACUAGCc---GUCGGUUGa-----GACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 93916 | 0.67 | 0.946034 |
Target: 5'- cCGUCgCUgGGUCGGUAGCuCAcaccuucuccgcGCUCUGc -3' miRNA: 3'- -GCAG-GAaCUAGCCGUCG-GU------------UGAGACc -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 111534 | 0.67 | 0.941484 |
Target: 5'- gGUCCagcGUCGGCGagcuGCCGACcuuUCUGGc -3' miRNA: 3'- gCAGGaacUAGCCGU----CGGUUG---AGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 136483 | 0.68 | 0.931659 |
Target: 5'- -uUCCU-GGUCGGCuuGGCCGcucaggucCUCUGGa -3' miRNA: 3'- gcAGGAaCUAGCCG--UCGGUu-------GAGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 80288 | 0.68 | 0.931659 |
Target: 5'- uGUCuCUcGGcUCGGCGGCgGGCccUCUGGa -3' miRNA: 3'- gCAG-GAaCU-AGCCGUCGgUUG--AGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 78729 | 0.68 | 0.931659 |
Target: 5'- aG-CCcaGAUCGGCAgGCCcuAugUCUGGg -3' miRNA: 3'- gCaGGaaCUAGCCGU-CGG--UugAGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 140307 | 0.69 | 0.894351 |
Target: 5'- uCGUCCUgcUGAccgcucagucguccUCGGUGGCCAACggcCUGu -3' miRNA: 3'- -GCAGGA--ACU--------------AGCCGUCGGUUGa--GACc -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 21552 | 0.7 | 0.860457 |
Target: 5'- cCGcCCggcGGUCGugagcGCGGCCAagGCUCUGGa -3' miRNA: 3'- -GCaGGaa-CUAGC-----CGUCGGU--UGAGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 140035 | 0.72 | 0.78326 |
Target: 5'- gGUCCUc--UCGGCAGCCGACgUC-GGu -3' miRNA: 3'- gCAGGAacuAGCCGUCGGUUG-AGaCC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 94365 | 0.66 | 0.971117 |
Target: 5'- gGUUgUUGAUCGGCgcccgcagGGCCAacaggucGCUCaGGc -3' miRNA: 3'- gCAGgAACUAGCCG--------UCGGU-------UGAGaCC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 44828 | 0.66 | 0.971404 |
Target: 5'- --aCCUUGGUguaggCGGCgaucgcGGCCAGCUCgccGGg -3' miRNA: 3'- gcaGGAACUA-----GCCG------UCGGUUGAGa--CC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 126721 | 0.66 | 0.971404 |
Target: 5'- gGUCCUcGAagUCgGGCAGCUGcCgUCUGGa -3' miRNA: 3'- gCAGGAaCU--AG-CCGUCGGUuG-AGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 101070 | 0.66 | 0.974161 |
Target: 5'- gGUgCCcUGggCGGCGuuaaguucGuCCAGCUCUGGa -3' miRNA: 3'- gCA-GGaACuaGCCGU--------C-GGUUGAGACC- -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 123760 | 0.66 | 0.974161 |
Target: 5'- uCGUCCccgcgcuugGGUCGGguGCCGACg---- -3' miRNA: 3'- -GCAGGaa-------CUAGCCguCGGUUGagacc -5' |
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19743 | 3' | -53.4 | NC_004687.1 | + | 144313 | 1.11 | 0.004278 |
Target: 5'- cCGUCCUUGAUCGGCAGCCAACUCUGGu -3' miRNA: 3'- -GCAGGAACUAGCCGUCGGUUGAGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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