Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19744 | 5' | -54.9 | NC_004687.1 | + | 142687 | 1.11 | 0.002893 |
Target: 5'- gCCGCAGCCUUCGAGGGGAAAUAGCCGa -3' miRNA: 3'- -GGCGUCGGAAGCUCCCCUUUAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 30905 | 0.71 | 0.732329 |
Target: 5'- gCGCGGCg-UCGAGGGuGGucaGGCCGg -3' miRNA: 3'- gGCGUCGgaAGCUCCC-CUuuaUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 73281 | 0.71 | 0.732329 |
Target: 5'- gCCGgAGCCUUCGAGccuGAAccuaucgccGUGGCCGg -3' miRNA: 3'- -GGCgUCGGAAGCUCcc-CUU---------UAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 145351 | 0.71 | 0.742099 |
Target: 5'- gUCGCGGCCUUUGucgccgcgcuGGGcGgcAUGGCCGc -3' miRNA: 3'- -GGCGUCGGAAGCu---------CCC-CuuUAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 13330 | 0.7 | 0.78932 |
Target: 5'- -gGCAGCaucUCGccGGGGAcGUAGCCGu -3' miRNA: 3'- ggCGUCGga-AGCu-CCCCUuUAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 30023 | 0.7 | 0.78932 |
Target: 5'- gCCGCGcucgacccGCUcgUCGAGGGGAAAcgaacgguccUGGUCGg -3' miRNA: 3'- -GGCGU--------CGGa-AGCUCCCCUUU----------AUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 3083 | 0.7 | 0.798376 |
Target: 5'- cCCGCccccgaAGCCUUCGAGGuac-AUGGCCu -3' miRNA: 3'- -GGCG------UCGGAAGCUCCccuuUAUCGGc -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 65362 | 0.7 | 0.807281 |
Target: 5'- gCGUAGgCUUCc-GGGGAcagGAUGGCCGc -3' miRNA: 3'- gGCGUCgGAAGcuCCCCU---UUAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 154045 | 0.69 | 0.816028 |
Target: 5'- aCCGCAGCCUcggccaUCGcgcuauagccGGGGAccUGGCCc -3' miRNA: 3'- -GGCGUCGGA------AGCu---------CCCCUuuAUCGGc -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 61849 | 0.69 | 0.81948 |
Target: 5'- aCCGCuGCCUUCcaGAucggcuucacccaacGGGGAAGUcGCUGa -3' miRNA: 3'- -GGCGuCGGAAG--CU---------------CCCCUUUAuCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 24060 | 0.69 | 0.833012 |
Target: 5'- -gGCAGCCUUacgggagaGAGGGGGcgcGAUcaGGCCc -3' miRNA: 3'- ggCGUCGGAAg-------CUCCCCU---UUA--UCGGc -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 16114 | 0.69 | 0.833012 |
Target: 5'- gUCGUggucagGGCCacCGAGGGGAucUGGCUGg -3' miRNA: 3'- -GGCG------UCGGaaGCUCCCCUuuAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 27229 | 0.69 | 0.857102 |
Target: 5'- gUCGCAcagacGCCcgUUGAGGGGAugaccGCCGa -3' miRNA: 3'- -GGCGU-----CGGa-AGCUCCCCUuuau-CGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 129432 | 0.68 | 0.864733 |
Target: 5'- aUGCcGCCUUCGAGGGccauccGCCGc -3' miRNA: 3'- gGCGuCGGAAGCUCCCcuuuauCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 130146 | 0.68 | 0.872155 |
Target: 5'- gCGCGGCCUgagCGAcGGGGGcaagAGCg- -3' miRNA: 3'- gGCGUCGGAa--GCU-CCCCUuua-UCGgc -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 7509 | 0.68 | 0.872155 |
Target: 5'- uUCGCGacacGCCga-GAGGGGAAcaAGCCc -3' miRNA: 3'- -GGCGU----CGGaagCUCCCCUUuaUCGGc -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 115382 | 0.68 | 0.88635 |
Target: 5'- cUCGacgGGCgaUCGAGGcccgaGGAGAUGGCCGc -3' miRNA: 3'- -GGCg--UCGgaAGCUCC-----CCUUUAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 131013 | 0.67 | 0.899646 |
Target: 5'- uUCGCAGCCUcgCGGGcGGcGAUGGuuGc -3' miRNA: 3'- -GGCGUCGGAa-GCUCcCCuUUAUCggC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 101560 | 0.67 | 0.899646 |
Target: 5'- gCGCGGCCUggGAcucccGGGcGGucUGGCCGg -3' miRNA: 3'- gGCGUCGGAagCU-----CCC-CUuuAUCGGC- -5' |
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19744 | 5' | -54.9 | NC_004687.1 | + | 93241 | 0.67 | 0.899646 |
Target: 5'- aCGCAGCCgaCGAgcuguuccccauGGGGAAGgcgagagcGCCGc -3' miRNA: 3'- gGCGUCGGaaGCU------------CCCCUUUau------CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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