miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 5' -54.9 NC_004687.1 + 3083 0.7 0.798376
Target:  5'- cCCGCccccgaAGCCUUCGAGGuac-AUGGCCu -3'
miRNA:   3'- -GGCG------UCGGAAGCUCCccuuUAUCGGc -5'
19744 5' -54.9 NC_004687.1 + 7107 0.67 0.923438
Target:  5'- gCGCGGCCUg-GucGGcGAAGUAGCgCGa -3'
miRNA:   3'- gGCGUCGGAagCucCC-CUUUAUCG-GC- -5'
19744 5' -54.9 NC_004687.1 + 7509 0.68 0.872155
Target:  5'- uUCGCGacacGCCga-GAGGGGAAcaAGCCc -3'
miRNA:   3'- -GGCGU----CGGaagCUCCCCUUuaUCGGc -5'
19744 5' -54.9 NC_004687.1 + 13254 0.66 0.947824
Target:  5'- gCUGCGGCCauccgCGAGGcccagcauGAcGUGGCCGa -3'
miRNA:   3'- -GGCGUCGGaa---GCUCCc-------CUuUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 13330 0.7 0.78932
Target:  5'- -gGCAGCaucUCGccGGGGAcGUAGCCGu -3'
miRNA:   3'- ggCGUCGga-AGCu-CCCCUuUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 16114 0.69 0.833012
Target:  5'- gUCGUggucagGGCCacCGAGGGGAucUGGCUGg -3'
miRNA:   3'- -GGCG------UCGGaaGCUCCCCUuuAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 24060 0.69 0.833012
Target:  5'- -gGCAGCCUUacgggagaGAGGGGGcgcGAUcaGGCCc -3'
miRNA:   3'- ggCGUCGGAAg-------CUCCCCU---UUA--UCGGc -5'
19744 5' -54.9 NC_004687.1 + 24125 0.66 0.947824
Target:  5'- aCCGgAGCCUcCGA-GGGAGGU-GCUa -3'
miRNA:   3'- -GGCgUCGGAaGCUcCCCUUUAuCGGc -5'
19744 5' -54.9 NC_004687.1 + 27075 0.66 0.947824
Target:  5'- cCCGCAGgCgagCGAucGGGGuGcgGGCCu -3'
miRNA:   3'- -GGCGUCgGaa-GCU--CCCCuUuaUCGGc -5'
19744 5' -54.9 NC_004687.1 + 27229 0.69 0.857102
Target:  5'- gUCGCAcagacGCCcgUUGAGGGGAugaccGCCGa -3'
miRNA:   3'- -GGCGU-----CGGa-AGCUCCCCUuuau-CGGC- -5'
19744 5' -54.9 NC_004687.1 + 30023 0.7 0.78932
Target:  5'- gCCGCGcucgacccGCUcgUCGAGGGGAAAcgaacgguccUGGUCGg -3'
miRNA:   3'- -GGCGU--------CGGa-AGCUCCCCUUU----------AUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 30905 0.71 0.732329
Target:  5'- gCGCGGCg-UCGAGGGuGGucaGGCCGg -3'
miRNA:   3'- gGCGUCGgaAGCUCCC-CUuuaUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 41565 0.66 0.938305
Target:  5'- aCCGCAGUUaugUCGAaaacGGGcGAGucgccccGUAGCCGc -3'
miRNA:   3'- -GGCGUCGGa--AGCU----CCC-CUU-------UAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 43163 0.66 0.947824
Target:  5'- gCCGguGCUgccggagCGGGuGGGGcgggGGCCGg -3'
miRNA:   3'- -GGCguCGGaa-----GCUC-CCCUuua-UCGGC- -5'
19744 5' -54.9 NC_004687.1 + 61849 0.69 0.81948
Target:  5'- aCCGCuGCCUUCcaGAucggcuucacccaacGGGGAAGUcGCUGa -3'
miRNA:   3'- -GGCGuCGGAAG--CU---------------CCCCUUUAuCGGC- -5'
19744 5' -54.9 NC_004687.1 + 63953 0.66 0.938782
Target:  5'- gCGgGGCC--CGAGGGGGccccGCCGg -3'
miRNA:   3'- gGCgUCGGaaGCUCCCCUuuauCGGC- -5'
19744 5' -54.9 NC_004687.1 + 65362 0.7 0.807281
Target:  5'- gCGUAGgCUUCc-GGGGAcagGAUGGCCGc -3'
miRNA:   3'- gGCGUCgGAAGcuCCCCU---UUAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 66604 0.67 0.928792
Target:  5'- gCGCGGUgcUgGAGGaGGAGA-AGCCGg -3'
miRNA:   3'- gGCGUCGgaAgCUCC-CCUUUaUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 67680 0.66 0.947824
Target:  5'- -gGCAGCac-CGAGGaGGGAcUGGUCGa -3'
miRNA:   3'- ggCGUCGgaaGCUCC-CCUUuAUCGGC- -5'
19744 5' -54.9 NC_004687.1 + 73281 0.71 0.732329
Target:  5'- gCCGgAGCCUUCGAGccuGAAccuaucgccGUGGCCGg -3'
miRNA:   3'- -GGCgUCGGAAGCUCcc-CUU---------UAUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.