miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 3' -51.6 NC_004687.1 + 124006 0.66 0.991834
Target:  5'- uGGGUCAgcagCCGAuGCAUGUGcUCCg -3'
miRNA:   3'- -UCUAGUaaggGGCUcCGUACACuAGG- -5'
19745 3' -51.6 NC_004687.1 + 151234 0.66 0.989335
Target:  5'- cGA-CGUUCCgCGAGGCAgucaagcUGAUCa -3'
miRNA:   3'- uCUaGUAAGGgGCUCCGUac-----ACUAGg -5'
19745 3' -51.6 NC_004687.1 + 96420 0.66 0.98788
Target:  5'- aGGAUCAUUCCgcuCCGu--UAUGUGAUCg -3'
miRNA:   3'- -UCUAGUAAGG---GGCuccGUACACUAGg -5'
19745 3' -51.6 NC_004687.1 + 126307 0.66 0.98788
Target:  5'- cGAUCGag-CCCGAGGacccgGUGAUUCa -3'
miRNA:   3'- uCUAGUaagGGGCUCCgua--CACUAGG- -5'
19745 3' -51.6 NC_004687.1 + 4403 0.66 0.986276
Target:  5'- uGGUCAc-CCCUGAGcGCGagGUGAUCa -3'
miRNA:   3'- uCUAGUaaGGGGCUC-CGUa-CACUAGg -5'
19745 3' -51.6 NC_004687.1 + 18690 0.66 0.986276
Target:  5'- cGGUC--UCCCCGGGGUAUccgcugGUGcgcUCCa -3'
miRNA:   3'- uCUAGuaAGGGGCUCCGUA------CACu--AGG- -5'
19745 3' -51.6 NC_004687.1 + 84121 0.67 0.984514
Target:  5'- gAGAUCAg--CCCggccaggccggGAGGCAugucacguguggUGUGGUCCu -3'
miRNA:   3'- -UCUAGUaagGGG-----------CUCCGU------------ACACUAGG- -5'
19745 3' -51.6 NC_004687.1 + 52827 0.67 0.984514
Target:  5'- gGGuauUCAUU-CCCGAGaauuGUGUGUGAUCUa -3'
miRNA:   3'- -UCu--AGUAAgGGGCUC----CGUACACUAGG- -5'
19745 3' -51.6 NC_004687.1 + 106422 0.67 0.984514
Target:  5'- cGAUCGUg-CCCGAGcGCGUcgGcGAUCCc -3'
miRNA:   3'- uCUAGUAagGGGCUC-CGUA--CaCUAGG- -5'
19745 3' -51.6 NC_004687.1 + 133805 0.67 0.980481
Target:  5'- -aGUCAUUCCUCgGAGuuAUGUGAcCCg -3'
miRNA:   3'- ucUAGUAAGGGG-CUCcgUACACUaGG- -5'
19745 3' -51.6 NC_004687.1 + 126875 0.67 0.980481
Target:  5'- cGGAUUcugagcUCUCCGGGGUcgGUGGugUCCu -3'
miRNA:   3'- -UCUAGua----AGGGGCUCCGuaCACU--AGG- -5'
19745 3' -51.6 NC_004687.1 + 86060 0.67 0.980481
Target:  5'- gGGAUUAUcgCCgCCGgucAGGCcgGUGAcgUCCu -3'
miRNA:   3'- -UCUAGUAa-GG-GGC---UCCGuaCACU--AGG- -5'
19745 3' -51.6 NC_004687.1 + 103180 0.67 0.975711
Target:  5'- gGGGUaGUUCUCCG-GGCGaGUGAacUCCu -3'
miRNA:   3'- -UCUAgUAAGGGGCuCCGUaCACU--AGG- -5'
19745 3' -51.6 NC_004687.1 + 141313 0.68 0.97303
Target:  5'- cGGUCAUcaccgaCCCGGGGUAcccguaucgaccUGUGGUCUu -3'
miRNA:   3'- uCUAGUAag----GGGCUCCGU------------ACACUAGG- -5'
19745 3' -51.6 NC_004687.1 + 45425 0.68 0.970141
Target:  5'- cGGUCGUUggCCCGGGGCcgGaaGUCCu -3'
miRNA:   3'- uCUAGUAAg-GGGCUCCGuaCacUAGG- -5'
19745 3' -51.6 NC_004687.1 + 69191 0.68 0.957915
Target:  5'- gAGGUCA-UCCCCGgcGGGCAggccacccagaccgGUGcgCCc -3'
miRNA:   3'- -UCUAGUaAGGGGC--UCCGUa-------------CACuaGG- -5'
19745 3' -51.6 NC_004687.1 + 95297 0.69 0.953987
Target:  5'- -aGUCcUUCCCCGGGGCAaacuggacaucucgGUG-UCCa -3'
miRNA:   3'- ucUAGuAAGGGGCUCCGUa-------------CACuAGG- -5'
19745 3' -51.6 NC_004687.1 + 85046 0.7 0.928544
Target:  5'- cGGAgg--UCCCCG-GGCAcGUGGUCa -3'
miRNA:   3'- -UCUaguaAGGGGCuCCGUaCACUAGg -5'
19745 3' -51.6 NC_004687.1 + 121700 0.7 0.928544
Target:  5'- cGGUCAauucgaccggCCCCGGGGCggGcUGAUUCa -3'
miRNA:   3'- uCUAGUaa--------GGGGCUCCGuaC-ACUAGG- -5'
19745 3' -51.6 NC_004687.1 + 142997 0.7 0.923031
Target:  5'- gGGAguUCAUUCCCCGucAGGCGcucagGAUCUc -3'
miRNA:   3'- -UCU--AGUAAGGGGC--UCCGUaca--CUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.