miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 3' -52.4 NC_004687.1 + 139087 1.11 0.005772
Target:  5'- gCCAACUCGUCGGUGGUGAUGGUGACAu -3'
miRNA:   3'- -GGUUGAGCAGCCACCACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 91502 0.78 0.499405
Target:  5'- gCGACguggUCGUUGGUGGUGAaGGUGAUg -3'
miRNA:   3'- gGUUG----AGCAGCCACCACUaCCACUGu -5'
19746 3' -52.4 NC_004687.1 + 54327 0.78 0.529005
Target:  5'- gCCAACgugaCGcUCGGUGGUGGUGauGUGGCAc -3'
miRNA:   3'- -GGUUGa---GC-AGCCACCACUAC--CACUGU- -5'
19746 3' -52.4 NC_004687.1 + 72199 0.77 0.549093
Target:  5'- -gAGCUCGUCGcUGGUGGUGGccGACAg -3'
miRNA:   3'- ggUUGAGCAGCcACCACUACCa-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 81970 0.77 0.549093
Target:  5'- aCCAACggCGcCGGUGGcggcGGUGGUGGCGg -3'
miRNA:   3'- -GGUUGa-GCaGCCACCa---CUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 40474 0.77 0.559227
Target:  5'- gCCGACgUCGUCguGGUcGGUGAUGGcGACAg -3'
miRNA:   3'- -GGUUG-AGCAG--CCA-CCACUACCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 42776 0.76 0.610538
Target:  5'- aCGAC-CGUCGG-GGUGAUGuGUGGCc -3'
miRNA:   3'- gGUUGaGCAGCCaCCACUAC-CACUGu -5'
19746 3' -52.4 NC_004687.1 + 45561 0.76 0.620879
Target:  5'- gCCAGCgacaUCGcCGGUGGUGugGGUGACGu -3'
miRNA:   3'- -GGUUG----AGCaGCCACCACuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 102654 0.73 0.772187
Target:  5'- aCCGcucCUCGUUGGUGGUGccGGUG-CGg -3'
miRNA:   3'- -GGUu--GAGCAGCCACCACuaCCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 138538 0.73 0.781604
Target:  5'- cUCAcCUCGcUCGGUGGUcg-GGUGACGg -3'
miRNA:   3'- -GGUuGAGC-AGCCACCAcuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 79991 0.73 0.781604
Target:  5'- aCCAACgCcUCGGUGGUGAUGuGaUGACc -3'
miRNA:   3'- -GGUUGaGcAGCCACCACUAC-C-ACUGu -5'
19746 3' -52.4 NC_004687.1 + 114263 0.72 0.834074
Target:  5'- cUCGGCuUCGUCGGcaUGGUGAgucuggaUGGUGugGu -3'
miRNA:   3'- -GGUUG-AGCAGCC--ACCACU-------ACCACugU- -5'
19746 3' -52.4 NC_004687.1 + 142902 0.72 0.834911
Target:  5'- gUCAGCUCGgUGGUGGUcugGGUGAUg -3'
miRNA:   3'- -GGUUGAGCaGCCACCAcuaCCACUGu -5'
19746 3' -52.4 NC_004687.1 + 136142 0.72 0.843183
Target:  5'- uCC-ACUCGUCgugGGUGGccggggcGGUGGUGGCGa -3'
miRNA:   3'- -GGuUGAGCAG---CCACCa------CUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 92098 0.72 0.843183
Target:  5'- cCCAugUCG-CGGUGGUGcucgacGUGGUuGCGg -3'
miRNA:   3'- -GGUugAGCaGCCACCAC------UACCAcUGU- -5'
19746 3' -52.4 NC_004687.1 + 48737 0.71 0.851259
Target:  5'- gCCAGCUCG-CG--GGUGAUGGcGACGa -3'
miRNA:   3'- -GGUUGAGCaGCcaCCACUACCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 71873 0.71 0.859132
Target:  5'- aCCAGgaCGUCGGUGGUGAUcugcuuuccGGccuUGACc -3'
miRNA:   3'- -GGUUgaGCAGCCACCACUA---------CC---ACUGu -5'
19746 3' -52.4 NC_004687.1 + 139909 0.7 0.888466
Target:  5'- -----aUGUCGGagaUGGUGAUGGUGAUg -3'
miRNA:   3'- gguugaGCAGCC---ACCACUACCACUGu -5'
19746 3' -52.4 NC_004687.1 + 45522 0.7 0.888466
Target:  5'- gCAGCUCGUCagcggccagguuGGUGGUGAUcaaGGUcgGGCGc -3'
miRNA:   3'- gGUUGAGCAG------------CCACCACUA---CCA--CUGU- -5'
19746 3' -52.4 NC_004687.1 + 29797 0.7 0.891201
Target:  5'- aCCAcCUCGUagcucgggucgagcaCGGUGGcGAUGGUGuCGa -3'
miRNA:   3'- -GGUuGAGCA---------------GCCACCaCUACCACuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.