miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 3' -52.4 NC_004687.1 + 3848 0.67 0.976336
Target:  5'- gCCAugUaaagGUCGGUGGccggGGUGGCu -3'
miRNA:   3'- -GGUugAg---CAGCCACCacuaCCACUGu -5'
19746 3' -52.4 NC_004687.1 + 6740 0.66 0.982984
Target:  5'- gCAcCUCGUCGGUGGUcAUGcggcgcggggcuGUGGCc -3'
miRNA:   3'- gGUuGAGCAGCCACCAcUAC------------CACUGu -5'
19746 3' -52.4 NC_004687.1 + 14261 0.66 0.989526
Target:  5'- gCCAGauagUGgCGGUGGUGgcGGUGuCAg -3'
miRNA:   3'- -GGUUga--GCaGCCACCACuaCCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 29797 0.7 0.891201
Target:  5'- aCCAcCUCGUagcucgggucgagcaCGGUGGcGAUGGUGuCGa -3'
miRNA:   3'- -GGUuGAGCA---------------GCCACCaCUACCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 30033 0.69 0.928715
Target:  5'- aCCcGCUCGUcgaggggaaacgaaCGGUccuggucGGUGAUGGUGAg- -3'
miRNA:   3'- -GGuUGAGCA--------------GCCA-------CCACUACCACUgu -5'
19746 3' -52.4 NC_004687.1 + 35596 0.67 0.976336
Target:  5'- --cGCguaGUCGGUcucGUGGUGGUGGCGc -3'
miRNA:   3'- gguUGag-CAGCCAc--CACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 37931 0.66 0.980302
Target:  5'- aCCGGaugccCUCGUCGGUgagGGUGAacccggcaccggacUGGUuGACGu -3'
miRNA:   3'- -GGUU-----GAGCAGCCA---CCACU--------------ACCA-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 40474 0.77 0.559227
Target:  5'- gCCGACgUCGUCguGGUcGGUGAUGGcGACAg -3'
miRNA:   3'- -GGUUG-AGCAG--CCA-CCACUACCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 42776 0.76 0.610538
Target:  5'- aCGAC-CGUCGG-GGUGAUGuGUGGCc -3'
miRNA:   3'- gGUUGaGCAGCCaCCACUAC-CACUGu -5'
19746 3' -52.4 NC_004687.1 + 45522 0.7 0.888466
Target:  5'- gCAGCUCGUCagcggccagguuGGUGGUGAUcaaGGUcgGGCGc -3'
miRNA:   3'- gGUUGAGCAG------------CCACCACUA---CCA--CUGU- -5'
19746 3' -52.4 NC_004687.1 + 45561 0.76 0.620879
Target:  5'- gCCAGCgacaUCGcCGGUGGUGugGGUGACGu -3'
miRNA:   3'- -GGUUG----AGCaGCCACCACuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 48737 0.71 0.851259
Target:  5'- gCCAGCUCG-CG--GGUGAUGGcGACGa -3'
miRNA:   3'- -GGUUGAGCaGCcaCCACUACCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 52774 0.68 0.957668
Target:  5'- uUCucCUUGU-GGUGGUGGUGGUG-CGu -3'
miRNA:   3'- -GGuuGAGCAgCCACCACUACCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 54327 0.78 0.529005
Target:  5'- gCCAACgugaCGcUCGGUGGUGGUGauGUGGCAc -3'
miRNA:   3'- -GGUUGa---GC-AGCCACCACUAC--CACUGU- -5'
19746 3' -52.4 NC_004687.1 + 60284 0.68 0.96475
Target:  5'- aCCGaacuACUCGUCGGccuUGGcgucgUGgcGGUGGCGu -3'
miRNA:   3'- -GGU----UGAGCAGCC---ACC-----ACuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 63261 0.67 0.972096
Target:  5'- aCCAGCgcgguggCGUCGGUGuaggcgaccGcgaacgaggucucguUGAUGGUGGCGg -3'
miRNA:   3'- -GGUUGa------GCAGCCAC---------C---------------ACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 71873 0.71 0.859132
Target:  5'- aCCAGgaCGUCGGUGGUGAUcugcuuuccGGccuUGACc -3'
miRNA:   3'- -GGUUgaGCAGCCACCACUA---------CC---ACUGu -5'
19746 3' -52.4 NC_004687.1 + 72199 0.77 0.549093
Target:  5'- -gAGCUCGUCGcUGGUGGUGGccGACAg -3'
miRNA:   3'- ggUUGAGCAGCcACCACUACCa-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 72242 0.68 0.961321
Target:  5'- aCCGugcGCUCGgUGGUGGUGuacgGGUcGGCGc -3'
miRNA:   3'- -GGU---UGAGCaGCCACCACua--CCA-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 79991 0.73 0.781604
Target:  5'- aCCAACgCcUCGGUGGUGAUGuGaUGACc -3'
miRNA:   3'- -GGUUGaGcAGCCACCACUAC-C-ACUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.