miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 28044 0.67 0.848068
Target:  5'- aGGUGUGC-CG-UGCCGCCGAggagaucaUgGACGa -3'
miRNA:   3'- -CCACACGaGCuGUGGCGGCU--------GgCUGU- -5'
19746 5' -57.5 NC_004687.1 + 30188 0.72 0.575623
Target:  5'- uGGUcgGUGCUCGACGcCCGCCGuCaGGCc -3'
miRNA:   3'- -CCA--CACGAGCUGU-GGCGGCuGgCUGu -5'
19746 5' -57.5 NC_004687.1 + 30480 0.66 0.86324
Target:  5'- cGGUcUGC---ACACCGCCG-CCGACc -3'
miRNA:   3'- -CCAcACGagcUGUGGCGGCuGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 35165 0.66 0.85575
Target:  5'- ---cUGCUgGACACCGCCGuCCa--- -3'
miRNA:   3'- ccacACGAgCUGUGGCGGCuGGcugu -5'
19746 5' -57.5 NC_004687.1 + 37227 0.72 0.575623
Target:  5'- aGUGUGCccUGAUgcaGCCGCCGAccuCCGACGa -3'
miRNA:   3'- cCACACGa-GCUG---UGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 37249 0.72 0.555946
Target:  5'- --cGUGCUCagcgaGGCGCCGCCGccGCCGAg- -3'
miRNA:   3'- ccaCACGAG-----CUGUGGCGGC--UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 37785 0.68 0.771371
Target:  5'- ----cGCUgGGCA-CGCUGGCCGACAa -3'
miRNA:   3'- ccacaCGAgCUGUgGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 38393 0.66 0.8625
Target:  5'- aGGUGUucaucgaGCUCGACggACCGgUGAUgGACu -3'
miRNA:   3'- -CCACA-------CGAGCUG--UGGCgGCUGgCUGu -5'
19746 5' -57.5 NC_004687.1 + 38682 0.67 0.832151
Target:  5'- --cGUGCccaaccUCGACGCCGacuaCGACCG-CAu -3'
miRNA:   3'- ccaCACG------AGCUGUGGCg---GCUGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 41246 0.68 0.780474
Target:  5'- aGG-GUGCcguacucccCGGCAuaGCCGACCGGCu -3'
miRNA:   3'- -CCaCACGa--------GCUGUggCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 41870 0.68 0.789451
Target:  5'- aGGUGgaGUUCGuCGCCGaCGACCGGg- -3'
miRNA:   3'- -CCACa-CGAGCuGUGGCgGCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 42014 0.66 0.877617
Target:  5'- --gGUGCcCGGCGgagaGCCGAUCGACGa -3'
miRNA:   3'- ccaCACGaGCUGUgg--CGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 46019 0.66 0.89116
Target:  5'- aGGcgGU-CUUGGCGCCGCCGcGCgCGAUg -3'
miRNA:   3'- -CCa-CAcGAGCUGUGGCGGC-UG-GCUGu -5'
19746 5' -57.5 NC_004687.1 + 49484 0.66 0.887187
Target:  5'- cGGUGgccgGuCUCGGgAUCGCCGACgcgcucgggcacgauCGGCGa -3'
miRNA:   3'- -CCACa---C-GAGCUgUGGCGGCUG---------------GCUGU- -5'
19746 5' -57.5 NC_004687.1 + 59524 0.67 0.823928
Target:  5'- cGGUGUGCuugcccUCGacgaccaucccgGCACgGgUGACCGACGa -3'
miRNA:   3'- -CCACACG------AGC------------UGUGgCgGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 63239 0.75 0.392173
Target:  5'- aGGUG-GCaUCGACGCCGCaGcCCGACGg -3'
miRNA:   3'- -CCACaCG-AGCUGUGGCGgCuGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 64544 0.66 0.877617
Target:  5'- uGGUGgaaggGCUCGACcggcGCCaucauGCUGACCuACAc -3'
miRNA:   3'- -CCACa----CGAGCUG----UGG-----CGGCUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 66148 0.73 0.498284
Target:  5'- cGGUgGUGUcgUCGGCGCUGUCGACCuuGACGc -3'
miRNA:   3'- -CCA-CACG--AGCUGUGGCGGCUGG--CUGU- -5'
19746 5' -57.5 NC_004687.1 + 66493 0.68 0.762149
Target:  5'- gGGUGUGUcCGAgGCCGUCGaggucgcaccgcGCCGAg- -3'
miRNA:   3'- -CCACACGaGCUgUGGCGGC------------UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 67199 0.68 0.789451
Target:  5'- uGGUGcgcgucgaggGCUgGACccccgaccACCGcCCGACCGGCGu -3'
miRNA:   3'- -CCACa---------CGAgCUG--------UGGC-GGCUGGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.