miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 1816 0.66 0.890503
Target:  5'- gGGUGUcgauggcGCUCcACGCUGCCGaAUCGAa- -3'
miRNA:   3'- -CCACA-------CGAGcUGUGGCGGC-UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 4835 0.71 0.615384
Target:  5'- aGGUgGUGCgucCGGuCACCGUCGAcauCCGGCAu -3'
miRNA:   3'- -CCA-CACGa--GCU-GUGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 5529 0.67 0.815539
Target:  5'- uGGUG-GC-CGAggucaACCGCUGGCUGACc -3'
miRNA:   3'- -CCACaCGaGCUg----UGGCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 5760 0.69 0.714561
Target:  5'- cGGUGUGa--GGCguGCUGcCCGACCGGCu -3'
miRNA:   3'- -CCACACgagCUG--UGGC-GGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 7705 0.66 0.86324
Target:  5'- --cGUcCUCGuCGCCGUaucaGACCGGCAa -3'
miRNA:   3'- ccaCAcGAGCuGUGGCGg---CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 10117 0.68 0.780474
Target:  5'- aGUGUcgaggaGCUCGACGgCGCCauccagaucGACUGGCAc -3'
miRNA:   3'- cCACA------CGAGCUGUgGCGG---------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 11167 0.66 0.85575
Target:  5'- -cUGUcCgaacugCGACACCgaGCUGACCGACAc -3'
miRNA:   3'- ccACAcGa-----GCUGUGG--CGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 11552 0.66 0.85575
Target:  5'- cGGUGaucgGCggCGgaguaggaGCACCGCCGACCa--- -3'
miRNA:   3'- -CCACa---CGa-GC--------UGUGGCGGCUGGcugu -5'
19746 5' -57.5 NC_004687.1 + 11702 0.76 0.337447
Target:  5'- cGGUGuUGUagUCGGCGCCGCCGacgcGCUGGCGa -3'
miRNA:   3'- -CCAC-ACG--AGCUGUGGCGGC----UGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 12791 0.72 0.565763
Target:  5'- cGUGU-CUCGACGuCCGCCGagGCCGAgGg -3'
miRNA:   3'- cCACAcGAGCUGU-GGCGGC--UGGCUgU- -5'
19746 5' -57.5 NC_004687.1 + 15231 0.67 0.823928
Target:  5'- gGGUGaUGgUCGcgACCGUCGAuCCGGCGg -3'
miRNA:   3'- -CCAC-ACgAGCugUGGCGGCU-GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 15393 0.66 0.87053
Target:  5'- cGGUGaaGUUgGGCACCGC--ACCGGCGg -3'
miRNA:   3'- -CCACa-CGAgCUGUGGCGgcUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 15846 0.76 0.375959
Target:  5'- cGGUGaUGUcggacaucgggaUCGACGCCGCCGAggaccgggcaCCGACGu -3'
miRNA:   3'- -CCAC-ACG------------AGCUGUGGCGGCU----------GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 16876 0.66 0.884495
Target:  5'- gGGUG-GCguacgucuugaUCGACGagGCCGACCGcCAg -3'
miRNA:   3'- -CCACaCG-----------AGCUGUggCGGCUGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 17675 0.66 0.876917
Target:  5'- cGGUccaccGUUCGGCACCGuCCGuccggucGCCGACc -3'
miRNA:   3'- -CCAca---CGAGCUGUGGC-GGC-------UGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 19912 0.66 0.86324
Target:  5'- cGGgcgagGUGCagaugUGGCugCGCCuggaggccaaGACCGACGg -3'
miRNA:   3'- -CCa----CACGa----GCUGugGCGG----------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 22742 0.66 0.86324
Target:  5'- ----cGCugUCGACGCC-CUGACCGGCGc -3'
miRNA:   3'- ccacaCG--AGCUGUGGcGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 23167 0.66 0.884495
Target:  5'- uGGUGaccaucacCGACAgCGCCGACgGACGc -3'
miRNA:   3'- -CCACacga----GCUGUgGCGGCUGgCUGU- -5'
19746 5' -57.5 NC_004687.1 + 24819 0.68 0.798293
Target:  5'- cGGUGUcgGCcaggCGGuCACCGCCG-CCGuGCAg -3'
miRNA:   3'- -CCACA--CGa---GCU-GUGGCGGCuGGC-UGU- -5'
19746 5' -57.5 NC_004687.1 + 26702 0.66 0.85575
Target:  5'- cGGcG-GCUaCGACGCCGacaaGGCCGACu -3'
miRNA:   3'- -CCaCaCGA-GCUGUGGCgg--CUGGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.