miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 139121 1.1 0.002234
Target:  5'- gGGUGUGCUCGACACCGCCGACCGACAc -3'
miRNA:   3'- -CCACACGAGCUGUGGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 11702 0.76 0.337447
Target:  5'- cGGUGuUGUagUCGGCGCCGCCGacgcGCUGGCGa -3'
miRNA:   3'- -CCAC-ACG--AGCUGUGGCGGC----UGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 15846 0.76 0.375959
Target:  5'- cGGUGaUGUcggacaucgggaUCGACGCCGCCGAggaccgggcaCCGACGu -3'
miRNA:   3'- -CCAC-ACG------------AGCUGUGGCGGCU----------GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 92107 0.76 0.375959
Target:  5'- cGGUgGUGCUCGACGugguugcggUCGCCGGugcCCGACGa -3'
miRNA:   3'- -CCA-CACGAGCUGU---------GGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 63239 0.75 0.392173
Target:  5'- aGGUG-GCaUCGACGCCGCaGcCCGACGg -3'
miRNA:   3'- -CCACaCG-AGCUGUGGCGgCuGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 87939 0.74 0.425932
Target:  5'- --gGUGgUCGGCccGCCGUCGACCGGCu -3'
miRNA:   3'- ccaCACgAGCUG--UGGCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 139060 0.74 0.452356
Target:  5'- ----cGCUgGACACCGCC-ACCGACGa -3'
miRNA:   3'- ccacaCGAgCUGUGGCGGcUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 115111 0.73 0.488925
Target:  5'- cGGUG-GCUaguaccaguacCGGCgACCGCCGACCGGg- -3'
miRNA:   3'- -CCACaCGA-----------GCUG-UGGCGGCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 66148 0.73 0.498284
Target:  5'- cGGUgGUGUcgUCGGCGCUGUCGACCuuGACGc -3'
miRNA:   3'- -CCA-CACG--AGCUGUGGCGGCUGG--CUGU- -5'
19746 5' -57.5 NC_004687.1 + 107889 0.73 0.498284
Target:  5'- aGGUgGUGCUCGACGagGUCGACCG-CGc -3'
miRNA:   3'- -CCA-CACGAGCUGUggCGGCUGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 67325 0.73 0.498284
Target:  5'- ----cGCUCGGCcagACCGCCGACCuGCAg -3'
miRNA:   3'- ccacaCGAGCUG---UGGCGGCUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 110102 0.72 0.53647
Target:  5'- cGGcGcGCUgGAUGCCGCCGcccGCCGACGa -3'
miRNA:   3'- -CCaCaCGAgCUGUGGCGGC---UGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 37249 0.72 0.555946
Target:  5'- --cGUGCUCagcgaGGCGCCGCCGccGCCGAg- -3'
miRNA:   3'- ccaCACGAG-----CUGUGGCGGC--UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 12791 0.72 0.565763
Target:  5'- cGUGU-CUCGACGuCCGCCGagGCCGAgGg -3'
miRNA:   3'- cCACAcGAGCUGU-GGCGGC--UGGCUgU- -5'
19746 5' -57.5 NC_004687.1 + 30188 0.72 0.575623
Target:  5'- uGGUcgGUGCUCGACGcCCGCCGuCaGGCc -3'
miRNA:   3'- -CCA--CACGAGCUGU-GGCGGCuGgCUGu -5'
19746 5' -57.5 NC_004687.1 + 37227 0.72 0.575623
Target:  5'- aGUGUGCccUGAUgcaGCCGCCGAccuCCGACGa -3'
miRNA:   3'- cCACACGa-GCUG---UGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 4835 0.71 0.615384
Target:  5'- aGGUgGUGCgucCGGuCACCGUCGAcauCCGGCAu -3'
miRNA:   3'- -CCA-CACGa--GCU-GUGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 90429 0.71 0.625372
Target:  5'- gGGUGUagGCggUCaGCAcuCCGCCGACCGGCu -3'
miRNA:   3'- -CCACA--CG--AGcUGU--GGCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 88399 0.71 0.625372
Target:  5'- cGGUG-GCgcgCGAgAUCGCCGGUCGGCAc -3'
miRNA:   3'- -CCACaCGa--GCUgUGGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 89150 0.7 0.645354
Target:  5'- ----cGCUCGGCGCCGCCGgguagaACCG-CAu -3'
miRNA:   3'- ccacaCGAGCUGUGGCGGC------UGGCuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.