miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 86179 0.68 0.798293
Target:  5'- --gGUGCUUGACGCCcuGCCGGacCCGGa- -3'
miRNA:   3'- ccaCACGAGCUGUGG--CGGCU--GGCUgu -5'
19746 5' -57.5 NC_004687.1 + 139560 0.69 0.733858
Target:  5'- ----cGCgUCGGCGCCGUggaGACCGGCAa -3'
miRNA:   3'- ccacaCG-AGCUGUGGCGg--CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 137490 0.69 0.752817
Target:  5'- aGGuUGUGgUCGuu-CCGCUGACCGAa- -3'
miRNA:   3'- -CC-ACACgAGCuguGGCGGCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 37785 0.68 0.771371
Target:  5'- ----cGCUgGGCA-CGCUGGCCGACAa -3'
miRNA:   3'- ccacaCGAgCUGUgGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 107272 0.68 0.771371
Target:  5'- ----cGC-CGACGCCGaCCGGCuCGACGa -3'
miRNA:   3'- ccacaCGaGCUGUGGC-GGCUG-GCUGU- -5'
19746 5' -57.5 NC_004687.1 + 10117 0.68 0.780474
Target:  5'- aGUGUcgaggaGCUCGACGgCGCCauccagaucGACUGGCAc -3'
miRNA:   3'- cCACA------CGAGCUGUgGCGG---------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 78953 0.68 0.780474
Target:  5'- --gGUGCaCG-CGCCGCaGACCGGCGa -3'
miRNA:   3'- ccaCACGaGCuGUGGCGgCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 41870 0.68 0.789451
Target:  5'- aGGUGgaGUUCGuCGCCGaCGACCGGg- -3'
miRNA:   3'- -CCACa-CGAGCuGUGGCgGCUGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 67199 0.68 0.789451
Target:  5'- uGGUGcgcgucgaggGCUgGACccccgaccACCGcCCGACCGGCGu -3'
miRNA:   3'- -CCACa---------CGAgCUG--------UGGC-GGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 134108 0.69 0.733858
Target:  5'- cGG-GUGCUCGugGUCGUCGA-CGACGc -3'
miRNA:   3'- -CCaCACGAGCugUGGCGGCUgGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 5760 0.69 0.714561
Target:  5'- cGGUGUGa--GGCguGCUGcCCGACCGGCu -3'
miRNA:   3'- -CCACACgagCUG--UGGC-GGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 113123 0.69 0.704809
Target:  5'- ----cGCg-GACAUUGCCGACCGGCGa -3'
miRNA:   3'- ccacaCGagCUGUGGCGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 139060 0.74 0.452356
Target:  5'- ----cGCUgGACACCGCC-ACCGACGa -3'
miRNA:   3'- ccacaCGAgCUGUGGCGGcUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 107889 0.73 0.498284
Target:  5'- aGGUgGUGCUCGACGagGUCGACCG-CGc -3'
miRNA:   3'- -CCA-CACGAGCUGUggCGGCUGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 67325 0.73 0.498284
Target:  5'- ----cGCUCGGCcagACCGCCGACCuGCAg -3'
miRNA:   3'- ccacaCGAGCUG---UGGCGGCUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 30188 0.72 0.575623
Target:  5'- uGGUcgGUGCUCGACGcCCGCCGuCaGGCc -3'
miRNA:   3'- -CCA--CACGAGCUGU-GGCGGCuGgCUGu -5'
19746 5' -57.5 NC_004687.1 + 37227 0.72 0.575623
Target:  5'- aGUGUGCccUGAUgcaGCCGCCGAccuCCGACGa -3'
miRNA:   3'- cCACACGa-GCUG---UGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 4835 0.71 0.615384
Target:  5'- aGGUgGUGCgucCGGuCACCGUCGAcauCCGGCAu -3'
miRNA:   3'- -CCA-CACGa--GCU-GUGGCGGCU---GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 86657 0.7 0.675233
Target:  5'- cGUGUcGCggugUCGAagaggaccuaCACCGCCGACCuGGCAa -3'
miRNA:   3'- cCACA-CG----AGCU----------GUGGCGGCUGG-CUGU- -5'
19746 5' -57.5 NC_004687.1 + 95613 0.7 0.694013
Target:  5'- --cGUGUUCGAaucacgcCACCGCCacgacgccaaGGCCGACGa -3'
miRNA:   3'- ccaCACGAGCU-------GUGGCGG----------CUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.