miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 127149 0.67 0.939187
Target:  5'- gUGuAACUGGcAACacuaCGGAcucuGACUCCGUCa -3'
miRNA:   3'- -AC-UUGGCC-UUGg---GUCUu---CUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 84900 0.67 0.939187
Target:  5'- cGAGCCGGAGgucgucgagacCCCGGGcccAGACgCgGUCc -3'
miRNA:   3'- aCUUGGCCUU-----------GGGUCU---UCUGaGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 44862 0.67 0.939187
Target:  5'- cGGGCCGGAugcCCCGGGuguGCU-CGUCg -3'
miRNA:   3'- aCUUGGCCUu--GGGUCUuc-UGAgGCAG- -5'
19747 5' -53.6 NC_004687.1 + 103524 0.67 0.939187
Target:  5'- aGAA-CGGAGCCCcuacggcuggcAGGccugGGGCUCCGUUu -3'
miRNA:   3'- aCUUgGCCUUGGG-----------UCU----UCUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 52374 0.67 0.937737
Target:  5'- cGAAUugcaaaaaCGGAGcCCCAGGccugccagccguagGGGCUCCGUUc -3'
miRNA:   3'- aCUUG--------GCCUU-GGGUCU--------------UCUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 95160 0.67 0.934267
Target:  5'- --cACCGGAGCCguuGAAGACguacgggCCGUUc -3'
miRNA:   3'- acuUGGCCUUGGgu-CUUCUGa------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 79863 0.68 0.927505
Target:  5'- gGGACUGGGagaacggcuucaccACCCAGAuGACcaucauggcgCCGUCg -3'
miRNA:   3'- aCUUGGCCU--------------UGGGUCUuCUGa---------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 111426 0.68 0.923692
Target:  5'- uUGGACCGGGugCCAGc-GGCaCCGg- -3'
miRNA:   3'- -ACUUGGCCUugGGUCuuCUGaGGCag -5'
19747 5' -53.6 NC_004687.1 + 147774 0.68 0.923692
Target:  5'- cUGAAUCGGGACgaCCAGggGA-UUgGUCa -3'
miRNA:   3'- -ACUUGGCCUUG--GGUCuuCUgAGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 97368 0.68 0.923692
Target:  5'- uUGGG-CGG-ACCCGGAAG-CUCCGg- -3'
miRNA:   3'- -ACUUgGCCuUGGGUCUUCuGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 105193 0.68 0.923692
Target:  5'- gUGAacagGCCGGuGCCCGcgcuGGAGAcCUCgGUCa -3'
miRNA:   3'- -ACU----UGGCCuUGGGU----CUUCU-GAGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 33818 0.68 0.920328
Target:  5'- aGGACCGcGAcGCCCcgguacaggccauccAGGAGaccuacGCUCCGUCg -3'
miRNA:   3'- aCUUGGC-CU-UGGG---------------UCUUC------UGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 90740 0.68 0.918037
Target:  5'- -uGGCCGGGcuguaaaCCAGggGACUCCa-- -3'
miRNA:   3'- acUUGGCCUug-----GGUCuuCUGAGGcag -5'
19747 5' -53.6 NC_004687.1 + 77311 0.68 0.912137
Target:  5'- gGAugGCCGGAAUCgCGGu-GGCUCCGg- -3'
miRNA:   3'- aCU--UGGCCUUGG-GUCuuCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 40458 0.68 0.912137
Target:  5'- gGAACCGGAaguGCCCGcc-GACgUCGUCg -3'
miRNA:   3'- aCUUGGCCU---UGGGUcuuCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 18635 0.68 0.912137
Target:  5'- --uGCCGGGACCC-GAAGAC-CCa-- -3'
miRNA:   3'- acuUGGCCUUGGGuCUUCUGaGGcag -5'
19747 5' -53.6 NC_004687.1 + 120977 0.68 0.905995
Target:  5'- aGGACCGGAcgaucACUCAGGAGAUgacgCUGa- -3'
miRNA:   3'- aCUUGGCCU-----UGGGUCUUCUGa---GGCag -5'
19747 5' -53.6 NC_004687.1 + 85950 0.68 0.905367
Target:  5'- -uGGCCGGAguugggauugaccACCCGGAuGGugUCgGUCu -3'
miRNA:   3'- acUUGGCCU-------------UGGGUCU-UCugAGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 95463 0.69 0.899612
Target:  5'- cGAGCCGGuugGCCCGGAccugGGugUCgaaGUUg -3'
miRNA:   3'- aCUUGGCCu--UGGGUCU----UCugAGg--CAG- -5'
19747 5' -53.6 NC_004687.1 + 56323 0.69 0.89299
Target:  5'- aGAccguCCGG-ACCCGGAccugcgccGGGCUCCGa- -3'
miRNA:   3'- aCUu---GGCCuUGGGUCU--------UCUGAGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.