miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 3' -51 NC_004687.1 + 51224 0.67 0.9878
Target:  5'- cCACggCGgCGG--CGAUGUCGGUCAg -3'
miRNA:   3'- -GUGuaGUgGUCuaGCUACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 61216 0.66 0.990597
Target:  5'- aACucgCGCCAGugcGUCGAgacucUCGGUCACc -3'
miRNA:   3'- gUGua-GUGGUC---UAGCUac---AGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 66889 0.68 0.972783
Target:  5'- --gGUCACCGuggaGGUGUCGGUCAg -3'
miRNA:   3'- gugUAGUGGUcuagCUACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 74997 0.68 0.96986
Target:  5'- aACAUCGCCucGAcUCGGg--CGGUCACc -3'
miRNA:   3'- gUGUAGUGGu-CU-AGCUacaGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 75783 0.67 0.9878
Target:  5'- uGCAUCACCc---CGAUGUgGGcUCGCu -3'
miRNA:   3'- gUGUAGUGGucuaGCUACAgCC-AGUG- -5'
19748 3' -51 NC_004687.1 + 75933 0.71 0.897337
Target:  5'- uCACAUCACCAccGAggcguuggugUCGAgGUCGGUCu- -3'
miRNA:   3'- -GUGUAGUGGU--CU----------AGCUaCAGCCAGug -5'
19748 3' -51 NC_004687.1 + 83639 0.68 0.978005
Target:  5'- gGCAUCACCaacaAGGUCGAccUGUUcGUCAa -3'
miRNA:   3'- gUGUAGUGG----UCUAGCU--ACAGcCAGUg -5'
19748 3' -51 NC_004687.1 + 84319 0.69 0.951853
Target:  5'- uGC-UCGCCcucGUCGAUGUCGGUgagCACa -3'
miRNA:   3'- gUGuAGUGGuc-UAGCUACAGCCA---GUG- -5'
19748 3' -51 NC_004687.1 + 85818 0.7 0.938154
Target:  5'- gAUGUCGCCcGAUCGAUGU-GGcCACc -3'
miRNA:   3'- gUGUAGUGGuCUAGCUACAgCCaGUG- -5'
19748 3' -51 NC_004687.1 + 89882 0.67 0.9878
Target:  5'- gUugAUCACCAGcUCGcccUGUgGGUCGg -3'
miRNA:   3'- -GugUAGUGGUCuAGCu--ACAgCCAGUg -5'
19748 3' -51 NC_004687.1 + 95050 0.66 0.994672
Target:  5'- aUugGUCAUCAGggCGAagugGUCGGcCAg -3'
miRNA:   3'- -GugUAGUGGUCuaGCUa---CAGCCaGUg -5'
19748 3' -51 NC_004687.1 + 98391 0.71 0.903924
Target:  5'- gCGCGUgCGCCAGGuaugcagccugcUCGccAUGUCGGUCAa -3'
miRNA:   3'- -GUGUA-GUGGUCU------------AGC--UACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 101219 0.66 0.994985
Target:  5'- --gAUCAgCCAG-UCGAUGUuguugcucuccucggCGGUCACc -3'
miRNA:   3'- gugUAGU-GGUCuAGCUACA---------------GCCAGUG- -5'
19748 3' -51 NC_004687.1 + 101867 0.7 0.927215
Target:  5'- gACAUCACCGGAccgacccUCGAccgaGGUCACc -3'
miRNA:   3'- gUGUAGUGGUCU-------AGCUacagCCAGUG- -5'
19748 3' -51 NC_004687.1 + 122361 0.66 0.992864
Target:  5'- gACAUCGCCAGAcucaaaagCGAccUGUCuccucgGGUCAa -3'
miRNA:   3'- gUGUAGUGGUCUa-------GCU--ACAG------CCAGUg -5'
19748 3' -51 NC_004687.1 + 123203 0.69 0.951853
Target:  5'- aUACAUCACC-GAgcaCGGUGUCGaGaUCACc -3'
miRNA:   3'- -GUGUAGUGGuCUa--GCUACAGC-C-AGUG- -5'
19748 3' -51 NC_004687.1 + 123914 0.67 0.98927
Target:  5'- gGCGUCACUgcgcagcagguAGAggcCGAUGUCcggcaggaGGUCGCg -3'
miRNA:   3'- gUGUAGUGG-----------UCUa--GCUACAG--------CCAGUG- -5'
19748 3' -51 NC_004687.1 + 123989 0.67 0.98927
Target:  5'- cCGCG-CGCCc-GUCGGUGUgGGUCAg -3'
miRNA:   3'- -GUGUaGUGGucUAGCUACAgCCAGUg -5'
19748 3' -51 NC_004687.1 + 129319 0.69 0.966719
Target:  5'- uGCGUCGCgGGAaacgCGAUGccgcuggCGGUCAUg -3'
miRNA:   3'- gUGUAGUGgUCUa---GCUACa------GCCAGUG- -5'
19748 3' -51 NC_004687.1 + 135292 1.09 0.008878
Target:  5'- cCACAUCACCAGAUCGAUGUCGGUCACc -3'
miRNA:   3'- -GUGUAGUGGUCUAGCUACAGCCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.