Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19748 | 3' | -51 | NC_004687.1 | + | 1157 | 0.7 | 0.942971 |
Target: 5'- ----cCACCAGAcCGGUGUCGGUgAg -3' miRNA: 3'- guguaGUGGUCUaGCUACAGCCAgUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 2218 | 0.69 | 0.963353 |
Target: 5'- cCGCGUCGCCGuaccCGAgGUCGGUgACg -3' miRNA: 3'- -GUGUAGUGGUcua-GCUaCAGCCAgUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 9468 | 0.69 | 0.951853 |
Target: 5'- uGCGcCACCAGuccggCG-UGUCGGUCAUc -3' miRNA: 3'- gUGUaGUGGUCua---GCuACAGCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 13530 | 0.67 | 0.98927 |
Target: 5'- gGCGUcCACaCGGAUCGuguUGUaccgagUGGUCACg -3' miRNA: 3'- gUGUA-GUG-GUCUAGCu--ACA------GCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 16091 | 0.69 | 0.955926 |
Target: 5'- aACGUCGCCGGGaucaUCGAggcggCGGUCGg -3' miRNA: 3'- gUGUAGUGGUCU----AGCUaca--GCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 16766 | 0.66 | 0.991793 |
Target: 5'- uCGCAUCGucacagcgccCCGGggCGAggacugggUGUCGGUCGg -3' miRNA: 3'- -GUGUAGU----------GGUCuaGCU--------ACAGCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 17463 | 0.67 | 0.982448 |
Target: 5'- gACAUCG--GGAUCGGggUGUCGGcgUCACg -3' miRNA: 3'- gUGUAGUggUCUAGCU--ACAGCC--AGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 20000 | 0.69 | 0.955926 |
Target: 5'- uCACAUCGCgcugCGGGaUGGUGUCGGcgUCGCa -3' miRNA: 3'- -GUGUAGUG----GUCUaGCUACAGCC--AGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 21212 | 0.66 | 0.993821 |
Target: 5'- gCACAUCGCCgAGAUCGAgGcCGaGUaccaACg -3' miRNA: 3'- -GUGUAGUGG-UCUAGCUaCaGC-CAg---UG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 22552 | 0.68 | 0.978954 |
Target: 5'- gGC-UgGCCAGAugcucccuuggguugUCGAUGUCGG-CACc -3' miRNA: 3'- gUGuAgUGGUCU---------------AGCUACAGCCaGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 25238 | 0.66 | 0.990471 |
Target: 5'- gGCAugcUCGCCAGucaccccGUCGAUGUgaCGGUgCGCc -3' miRNA: 3'- gUGU---AGUGGUC-------UAGCUACA--GCCA-GUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 28234 | 0.69 | 0.966719 |
Target: 5'- gGCggCGCCAGAUCGAgcUCGGcgaCACc -3' miRNA: 3'- gUGuaGUGGUCUAGCUacAGCCa--GUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 28657 | 0.74 | 0.800666 |
Target: 5'- cCGCAUCGcCCAGAUCGA--UCGGgugaUCGCg -3' miRNA: 3'- -GUGUAGU-GGUCUAGCUacAGCC----AGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 31419 | 0.68 | 0.977763 |
Target: 5'- gCACcUCGCCGGugagcucGUCGAUG-CGGUC-Ca -3' miRNA: 3'- -GUGuAGUGGUC-------UAGCUACaGCCAGuG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 35090 | 0.67 | 0.98927 |
Target: 5'- cCGCcgC-CUGGAUCGGccUCGGUCGCu -3' miRNA: 3'- -GUGuaGuGGUCUAGCUacAGCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 35581 | 0.66 | 0.993821 |
Target: 5'- gGCGUCgGCCuGGAUCGcguaGUCGGUCuCg -3' miRNA: 3'- gUGUAG-UGG-UCUAGCua--CAGCCAGuG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 37896 | 0.75 | 0.752678 |
Target: 5'- cCGCGUCGCC-GAUgccagaGAUGUCGGUCGg -3' miRNA: 3'- -GUGUAGUGGuCUAg-----CUACAGCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 39655 | 0.67 | 0.981829 |
Target: 5'- uCGCG-CGCCGGAaggccgcagcguccUCGgcGUCGGUgGCg -3' miRNA: 3'- -GUGUaGUGGUCU--------------AGCuaCAGCCAgUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 45567 | 0.7 | 0.922182 |
Target: 5'- gACAUCGCCGG--UGGUGUgGGUgACg -3' miRNA: 3'- gUGUAGUGGUCuaGCUACAgCCAgUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 48921 | 0.66 | 0.993821 |
Target: 5'- uCGCAUCuggagcACCAGAUCGcgcUCGGccUCGCg -3' miRNA: 3'- -GUGUAG------UGGUCUAGCuacAGCC--AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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