Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19748 | 3' | -51 | NC_004687.1 | + | 28657 | 0.74 | 0.800666 |
Target: 5'- cCGCAUCGcCCAGAUCGA--UCGGgugaUCGCg -3' miRNA: 3'- -GUGUAGU-GGUCUAGCUacAGCC----AGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 101219 | 0.66 | 0.994985 |
Target: 5'- --gAUCAgCCAG-UCGAUGUuguugcucuccucggCGGUCACc -3' miRNA: 3'- gugUAGU-GGUCuAGCUACA---------------GCCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 21212 | 0.66 | 0.993821 |
Target: 5'- gCACAUCGCCgAGAUCGAgGcCGaGUaccaACg -3' miRNA: 3'- -GUGUAGUGG-UCUAGCUaCaGC-CAg---UG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 122361 | 0.66 | 0.992864 |
Target: 5'- gACAUCGCCAGAcucaaaagCGAccUGUCuccucgGGUCAa -3' miRNA: 3'- gUGUAGUGGUCUa-------GCU--ACAG------CCAGUg -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 16766 | 0.66 | 0.991793 |
Target: 5'- uCGCAUCGucacagcgccCCGGggCGAggacugggUGUCGGUCGg -3' miRNA: 3'- -GUGUAGU----------GGUCuaGCU--------ACAGCCAGUg -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 61216 | 0.66 | 0.990597 |
Target: 5'- aACucgCGCCAGugcGUCGAgacucUCGGUCACc -3' miRNA: 3'- gUGua-GUGGUC---UAGCUac---AGCCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 123914 | 0.67 | 0.98927 |
Target: 5'- gGCGUCACUgcgcagcagguAGAggcCGAUGUCcggcaggaGGUCGCg -3' miRNA: 3'- gUGUAGUGG-----------UCUa--GCUACAG--------CCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 35090 | 0.67 | 0.98927 |
Target: 5'- cCGCcgC-CUGGAUCGGccUCGGUCGCu -3' miRNA: 3'- -GUGuaGuGGUCUAGCUacAGCCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 75783 | 0.67 | 0.9878 |
Target: 5'- uGCAUCACCc---CGAUGUgGGcUCGCu -3' miRNA: 3'- gUGUAGUGGucuaGCUACAgCC-AGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 22552 | 0.68 | 0.978954 |
Target: 5'- gGC-UgGCCAGAugcucccuuggguugUCGAUGUCGG-CACc -3' miRNA: 3'- gUGuAgUGGUCU---------------AGCUACAGCCaGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 140681 | 0.72 | 0.868572 |
Target: 5'- gACGUgccCGCCGGAUCGA---CGGUCGCg -3' miRNA: 3'- gUGUA---GUGGUCUAGCUacaGCCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 45567 | 0.7 | 0.922182 |
Target: 5'- gACAUCGCCGG--UGGUGUgGGUgACg -3' miRNA: 3'- gUGUAGUGGUCuaGCUACAgCCAgUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 123203 | 0.69 | 0.951853 |
Target: 5'- aUACAUCACC-GAgcaCGGUGUCGaGaUCACc -3' miRNA: 3'- -GUGUAGUGGuCUa--GCUACAGC-C-AGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 16091 | 0.69 | 0.955926 |
Target: 5'- aACGUCGCCGGGaucaUCGAggcggCGGUCGg -3' miRNA: 3'- gUGUAGUGGUCU----AGCUaca--GCCAGUg -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 28234 | 0.69 | 0.966719 |
Target: 5'- gGCggCGCCAGAUCGAgcUCGGcgaCACc -3' miRNA: 3'- gUGuaGUGGUCUAGCUacAGCCa--GUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 83639 | 0.68 | 0.978005 |
Target: 5'- gGCAUCACCaacaAGGUCGAccUGUUcGUCAa -3' miRNA: 3'- gUGUAGUGG----UCUAGCU--ACAGcCAGUg -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 135292 | 1.09 | 0.008878 |
Target: 5'- cCACAUCACCAGAUCGAUGUCGGUCACc -3' miRNA: 3'- -GUGUAGUGGUCUAGCUACAGCCAGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 35581 | 0.66 | 0.993821 |
Target: 5'- gGCGUCgGCCuGGAUCGcguaGUCGGUCuCg -3' miRNA: 3'- gUGUAG-UGG-UCUAGCua--CAGCCAGuG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 48921 | 0.66 | 0.993821 |
Target: 5'- uCGCAUCuggagcACCAGAUCGcgcUCGGccUCGCg -3' miRNA: 3'- -GUGUAG------UGGUCUAGCuacAGCC--AGUG- -5' |
|||||||
19748 | 3' | -51 | NC_004687.1 | + | 144100 | 0.66 | 0.99326 |
Target: 5'- gCGCAUCcggggugccuucgaACCAGAUgacgcuguagggggCGGUGgCGGUCAUg -3' miRNA: 3'- -GUGUAG--------------UGGUCUA--------------GCUACaGCCAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home