miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 3' -51 NC_004687.1 + 135292 1.09 0.008878
Target:  5'- cCACAUCACCAGAUCGAUGUCGGUCACc -3'
miRNA:   3'- -GUGUAGUGGUCUAGCUACAGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 37896 0.75 0.752678
Target:  5'- cCGCGUCGCC-GAUgccagaGAUGUCGGUCGg -3'
miRNA:   3'- -GUGUAGUGGuCUAg-----CUACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 28657 0.74 0.800666
Target:  5'- cCGCAUCGcCCAGAUCGA--UCGGgugaUCGCg -3'
miRNA:   3'- -GUGUAGU-GGUCUAGCUacAGCC----AGUG- -5'
19748 3' -51 NC_004687.1 + 140681 0.72 0.868572
Target:  5'- gACGUgccCGCCGGAUCGA---CGGUCGCg -3'
miRNA:   3'- gUGUA---GUGGUCUAGCUacaGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 75933 0.71 0.897337
Target:  5'- uCACAUCACCAccGAggcguuggugUCGAgGUCGGUCu- -3'
miRNA:   3'- -GUGUAGUGGU--CU----------AGCUaCAGCCAGug -5'
19748 3' -51 NC_004687.1 + 98391 0.71 0.903924
Target:  5'- gCGCGUgCGCCAGGuaugcagccugcUCGccAUGUCGGUCAa -3'
miRNA:   3'- -GUGUA-GUGGUCU------------AGC--UACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 150247 0.71 0.903924
Target:  5'- aCGgGUCACgGGGaacagcUCGGUGUCGGUCu- -3'
miRNA:   3'- -GUgUAGUGgUCU------AGCUACAGCCAGug -5'
19748 3' -51 NC_004687.1 + 45567 0.7 0.922182
Target:  5'- gACAUCGCCGG--UGGUGUgGGUgACg -3'
miRNA:   3'- gUGUAGUGGUCuaGCUACAgCCAgUG- -5'
19748 3' -51 NC_004687.1 + 101867 0.7 0.927215
Target:  5'- gACAUCACCGGAccgacccUCGAccgaGGUCACc -3'
miRNA:   3'- gUGUAGUGGUCU-------AGCUacagCCAGUG- -5'
19748 3' -51 NC_004687.1 + 85818 0.7 0.938154
Target:  5'- gAUGUCGCCcGAUCGAUGU-GGcCACc -3'
miRNA:   3'- gUGUAGUGGuCUAGCUACAgCCaGUG- -5'
19748 3' -51 NC_004687.1 + 1157 0.7 0.942971
Target:  5'- ----cCACCAGAcCGGUGUCGGUgAg -3'
miRNA:   3'- guguaGUGGUCUaGCUACAGCCAgUg -5'
19748 3' -51 NC_004687.1 + 84319 0.69 0.951853
Target:  5'- uGC-UCGCCcucGUCGAUGUCGGUgagCACa -3'
miRNA:   3'- gUGuAGUGGuc-UAGCUACAGCCA---GUG- -5'
19748 3' -51 NC_004687.1 + 123203 0.69 0.951853
Target:  5'- aUACAUCACC-GAgcaCGGUGUCGaGaUCACc -3'
miRNA:   3'- -GUGUAGUGGuCUa--GCUACAGC-C-AGUG- -5'
19748 3' -51 NC_004687.1 + 9468 0.69 0.951853
Target:  5'- uGCGcCACCAGuccggCG-UGUCGGUCAUc -3'
miRNA:   3'- gUGUaGUGGUCua---GCuACAGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 16091 0.69 0.955926
Target:  5'- aACGUCGCCGGGaucaUCGAggcggCGGUCGg -3'
miRNA:   3'- gUGUAGUGGUCU----AGCUaca--GCCAGUg -5'
19748 3' -51 NC_004687.1 + 20000 0.69 0.955926
Target:  5'- uCACAUCGCgcugCGGGaUGGUGUCGGcgUCGCa -3'
miRNA:   3'- -GUGUAGUG----GUCUaGCUACAGCC--AGUG- -5'
19748 3' -51 NC_004687.1 + 2218 0.69 0.963353
Target:  5'- cCGCGUCGCCGuaccCGAgGUCGGUgACg -3'
miRNA:   3'- -GUGUAGUGGUcua-GCUaCAGCCAgUG- -5'
19748 3' -51 NC_004687.1 + 129319 0.69 0.966719
Target:  5'- uGCGUCGCgGGAaacgCGAUGccgcuggCGGUCAUg -3'
miRNA:   3'- gUGUAGUGgUCUa---GCUACa------GCCAGUG- -5'
19748 3' -51 NC_004687.1 + 28234 0.69 0.966719
Target:  5'- gGCggCGCCAGAUCGAgcUCGGcgaCACc -3'
miRNA:   3'- gUGuaGUGGUCUAGCUacAGCCa--GUG- -5'
19748 3' -51 NC_004687.1 + 74997 0.68 0.96986
Target:  5'- aACAUCGCCucGAcUCGGg--CGGUCACc -3'
miRNA:   3'- gUGUAGUGGu-CU-AGCUacaGCCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.