Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19750 | 3' | -55 | NC_004687.1 | + | 2770 | 0.68 | 0.86696 |
Target: 5'- aGCGUCacCGcCUGCUCguUGAGUAGCUUGc -3' miRNA: 3'- -CGCGGa-GCuGGCGAG--ACUCGUUGAAC- -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 5108 | 0.67 | 0.894602 |
Target: 5'- gGCGCCUCGugacgacGCCGaUCUGGcCAGCUa- -3' miRNA: 3'- -CGCGGAGC-------UGGCgAGACUcGUUGAac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 8425 | 0.68 | 0.851502 |
Target: 5'- aGCGCga-GGCCGCUCUGcAGCAGu--- -3' miRNA: 3'- -CGCGgagCUGGCGAGAC-UCGUUgaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 13436 | 0.65 | 0.945166 |
Target: 5'- cCGCCUUGGaggcCCGCagcgcgucCUGAGCAGCg-- -3' miRNA: 3'- cGCGGAGCU----GGCGa-------GACUCGUUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 16615 | 0.69 | 0.818224 |
Target: 5'- uUGCCgUCGACCGCcaggCUGAGCGc---- -3' miRNA: 3'- cGCGG-AGCUGGCGa---GACUCGUugaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 27622 | 0.66 | 0.930704 |
Target: 5'- uGCGCCuucaucUCGACCGCguccuugaugCUGGccGCGACg-- -3' miRNA: 3'- -CGCGG------AGCUGGCGa---------GACU--CGUUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 28413 | 0.68 | 0.851502 |
Target: 5'- uGCGCCggaGGCCGUUCcGAGCGcgAgUUGc -3' miRNA: 3'- -CGCGGag-CUGGCGAGaCUCGU--UgAAC- -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 29646 | 0.67 | 0.888528 |
Target: 5'- gGCGCCUgGAUUGCUCgUGAGaCggUUg- -3' miRNA: 3'- -CGCGGAgCUGGCGAG-ACUC-GuuGAac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 36758 | 0.66 | 0.929139 |
Target: 5'- gGCGuUCUCG-CCGUacuuguucuggacgUCacUGAGCAGCUUGg -3' miRNA: 3'- -CGC-GGAGCuGGCG--------------AG--ACUCGUUGAAC- -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 37710 | 0.66 | 0.9254 |
Target: 5'- aGCGCCUgGccagcuACCGCaagCaGGGCAACUUc -3' miRNA: 3'- -CGCGGAgC------UGGCGa--GaCUCGUUGAAc -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 50272 | 0.7 | 0.79144 |
Target: 5'- aGCGCUUCGuGCCgGUUCUGGccGCAGCUc- -3' miRNA: 3'- -CGCGGAGC-UGG-CGAGACU--CGUUGAac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 50841 | 0.73 | 0.601678 |
Target: 5'- gGCGuCCUUGAugccCUGCUCgucGGGCAGCUUGu -3' miRNA: 3'- -CGC-GGAGCU----GGCGAGa--CUCGUUGAAC- -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 51522 | 0.69 | 0.82682 |
Target: 5'- cGCGCCUCGugaCGCUgCUGGaagcuGCAGCg-- -3' miRNA: 3'- -CGCGGAGCug-GCGA-GACU-----CGUUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 65048 | 0.67 | 0.888528 |
Target: 5'- aCGCCUCGGUCGC-CUGGGCcacccAGCUg- -3' miRNA: 3'- cGCGGAGCUGGCGaGACUCG-----UUGAac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 65450 | 0.66 | 0.940586 |
Target: 5'- aGCGCCUgGGCCGacaUC-GAGCAc---- -3' miRNA: 3'- -CGCGGAgCUGGCg--AGaCUCGUugaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 74122 | 0.66 | 0.9254 |
Target: 5'- gGCGCCaCGACgCGCUCaGAGCccaccAGCa-- -3' miRNA: 3'- -CGCGGaGCUG-GCGAGaCUCG-----UUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 79106 | 0.66 | 0.919854 |
Target: 5'- gGCGCCggGcACCGUggcaccgggUCUGGGCGGCg-- -3' miRNA: 3'- -CGCGGagC-UGGCG---------AGACUCGUUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 86596 | 0.66 | 0.919854 |
Target: 5'- -gGCCgaagUGAUCGCgCUGGGCGGCa-- -3' miRNA: 3'- cgCGGa---GCUGGCGaGACUCGUUGaac -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 92956 | 0.69 | 0.809456 |
Target: 5'- -gGUCUCGAccugcCCGCUCaUGAGCAGgaUGa -3' miRNA: 3'- cgCGGAGCU-----GGCGAG-ACUCGUUgaAC- -5' |
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19750 | 3' | -55 | NC_004687.1 | + | 93375 | 0.65 | 0.944719 |
Target: 5'- uCGCgUCGACCGCcuUCUGGcucccacgucauuGCGACcUGa -3' miRNA: 3'- cGCGgAGCUGGCG--AGACU-------------CGUUGaAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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