miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19750 3' -55 NC_004687.1 + 50272 0.7 0.79144
Target:  5'- aGCGCUUCGuGCCgGUUCUGGccGCAGCUc- -3'
miRNA:   3'- -CGCGGAGC-UGG-CGAGACU--CGUUGAac -5'
19750 3' -55 NC_004687.1 + 79106 0.66 0.919854
Target:  5'- gGCGCCggGcACCGUggcaccgggUCUGGGCGGCg-- -3'
miRNA:   3'- -CGCGGagC-UGGCG---------AGACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 37710 0.66 0.9254
Target:  5'- aGCGCCUgGccagcuACCGCaagCaGGGCAACUUc -3'
miRNA:   3'- -CGCGGAgC------UGGCGa--GaCUCGUUGAAc -5'
19750 3' -55 NC_004687.1 + 74122 0.66 0.9254
Target:  5'- gGCGCCaCGACgCGCUCaGAGCccaccAGCa-- -3'
miRNA:   3'- -CGCGGaGCUG-GCGAGaCUCG-----UUGaac -5'
19750 3' -55 NC_004687.1 + 119221 0.66 0.9254
Target:  5'- cCGCCg-GugCGCUC-GGGCAcCUUGg -3'
miRNA:   3'- cGCGGagCugGCGAGaCUCGUuGAAC- -5'
19750 3' -55 NC_004687.1 + 144926 0.66 0.935766
Target:  5'- cGCGCCgacgUGGcCCGUgugaUGGGCgAACUUGg -3'
miRNA:   3'- -CGCGGa---GCU-GGCGag--ACUCG-UUGAAC- -5'
19750 3' -55 NC_004687.1 + 65450 0.66 0.940586
Target:  5'- aGCGCCUgGGCCGacaUC-GAGCAc---- -3'
miRNA:   3'- -CGCGGAgCUGGCg--AGaCUCGUugaac -5'
19750 3' -55 NC_004687.1 + 109913 0.66 0.940586
Target:  5'- gGCGCCaaGACCGC-CU--GCGACUg- -3'
miRNA:   3'- -CGCGGagCUGGCGaGAcuCGUUGAac -5'
19750 3' -55 NC_004687.1 + 93375 0.65 0.944719
Target:  5'- uCGCgUCGACCGCcuUCUGGcucccacgucauuGCGACcUGa -3'
miRNA:   3'- cGCGgAGCUGGCG--AGACU-------------CGUUGaAC- -5'
19750 3' -55 NC_004687.1 + 86596 0.66 0.919854
Target:  5'- -gGCCgaagUGAUCGCgCUGGGCGGCa-- -3'
miRNA:   3'- cgCGGa---GCUGGCGaGACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 125517 0.67 0.901769
Target:  5'- gGCGCCgaugCGAucCCGCUC--GGCGACg-- -3'
miRNA:   3'- -CGCGGa---GCU--GGCGAGacUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 51522 0.69 0.82682
Target:  5'- cGCGCCUCGugaCGCUgCUGGaagcuGCAGCg-- -3'
miRNA:   3'- -CGCGGAGCug-GCGA-GACU-----CGUUGaac -5'
19750 3' -55 NC_004687.1 + 8425 0.68 0.851502
Target:  5'- aGCGCga-GGCCGCUCUGcAGCAGu--- -3'
miRNA:   3'- -CGCGgagCUGGCGAGAC-UCGUUgaac -5'
19750 3' -55 NC_004687.1 + 28413 0.68 0.851502
Target:  5'- uGCGCCggaGGCCGUUCcGAGCGcgAgUUGc -3'
miRNA:   3'- -CGCGGag-CUGGCGAGaCUCGU--UgAAC- -5'
19750 3' -55 NC_004687.1 + 145353 0.68 0.881561
Target:  5'- cGCgGCCUUugucGCCGCgCUGGGCGGCaUGg -3'
miRNA:   3'- -CG-CGGAGc---UGGCGaGACUCGUUGaAC- -5'
19750 3' -55 NC_004687.1 + 29646 0.67 0.888528
Target:  5'- gGCGCCUgGAUUGCUCgUGAGaCggUUg- -3'
miRNA:   3'- -CGCGGAgCUGGCGAG-ACUC-GuuGAac -5'
19750 3' -55 NC_004687.1 + 152552 0.67 0.888528
Target:  5'- aUGCCUCG-CCGUUCgcGGGCAAggUGa -3'
miRNA:   3'- cGCGGAGCuGGCGAGa-CUCGUUgaAC- -5'
19750 3' -55 NC_004687.1 + 65048 0.67 0.888528
Target:  5'- aCGCCUCGGUCGC-CUGGGCcacccAGCUg- -3'
miRNA:   3'- cGCGGAGCUGGCGaGACUCG-----UUGAac -5'
19750 3' -55 NC_004687.1 + 5108 0.67 0.894602
Target:  5'- gGCGCCUCGugacgacGCCGaUCUGGcCAGCUa- -3'
miRNA:   3'- -CGCGGAGC-------UGGCgAGACUcGUUGAac -5'
19750 3' -55 NC_004687.1 + 134486 1.1 0.003202
Target:  5'- gGCGCCUCGACCGCUCUGAGCAACUUGu -3'
miRNA:   3'- -CGCGGAGCUGGCGAGACUCGUUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.