miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 35036 0.71 0.307145
Target:  5'- gCGGcGGCaGCAGcCCCGGcagccgcagGCGCGGCGGg -3'
miRNA:   3'- -GUC-UCGaCGUCcGGGCC---------UGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 35225 0.68 0.481108
Target:  5'- --cAGCUcGCGGGgCUGGAUGUGGCaGGu -3'
miRNA:   3'- gucUCGA-CGUCCgGGCCUGCGCCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 36432 0.68 0.463293
Target:  5'- uCGGAGUacauguUGguGGCCUGcucGACGUGGuCGGg -3'
miRNA:   3'- -GUCUCG------ACguCCGGGC---CUGCGCC-GCC- -5'
19751 3' -63.3 NC_004687.1 + 36629 0.69 0.437237
Target:  5'- -uGAGCcacaaGCAGGCCUGGACcucugacaGUGGCuGGa -3'
miRNA:   3'- guCUCGa----CGUCCGGGCCUG--------CGCCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 37317 0.69 0.395755
Target:  5'- gCAGuGGCUGgcaaCGGGCCCaGGCGuCGGCGa -3'
miRNA:   3'- -GUC-UCGAC----GUCCGGGcCUGC-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 38456 0.7 0.387768
Target:  5'- aAGAGUcGCucaacgccGCCCaGGACGCGGUGGc -3'
miRNA:   3'- gUCUCGaCGuc------CGGG-CCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 38722 0.7 0.364452
Target:  5'- aAGcuGCUGCAGGCCUGGggcaucggugagGCGCugaucuccGGCGGc -3'
miRNA:   3'- gUCu-CGACGUCCGGGCC------------UGCG--------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 42633 0.66 0.584073
Target:  5'- aCAGGGUUGCcaucGGCuuGGGCcucucucuugguGaCGGCGGu -3'
miRNA:   3'- -GUCUCGACGu---CCGggCCUG------------C-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 43183 0.7 0.356898
Target:  5'- uGGGGCggggGCcGGUCUGGGCGgGGCGc -3'
miRNA:   3'- gUCUCGa---CGuCCGGGCCUGCgCCGCc -5'
19751 3' -63.3 NC_004687.1 + 43348 0.69 0.44583
Target:  5'- -cGAGCUGCAGaagggcgccaGCCUGGACcaGUGGCu- -3'
miRNA:   3'- guCUCGACGUC----------CGGGCCUG--CGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 43733 0.67 0.555327
Target:  5'- aAGGGCggugccuucGguGGCCuCGGugGCGGUc- -3'
miRNA:   3'- gUCUCGa--------CguCCGG-GCCugCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 45823 0.68 0.472158
Target:  5'- -cGGGCgGCGGcauccagcGCgCCGGACGUGGCGc -3'
miRNA:   3'- guCUCGaCGUC--------CG-GGCCUGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 47658 0.7 0.349455
Target:  5'- cCAGGGUgugGUAGaGCCCaGACcCGGCGGu -3'
miRNA:   3'- -GUCUCGa--CGUC-CGGGcCUGcGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 47952 0.67 0.52701
Target:  5'- -cGGGCaaGCGGGCCaaGGugGCcaaGGCGGu -3'
miRNA:   3'- guCUCGa-CGUCCGGg-CCugCG---CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 48526 0.69 0.44583
Target:  5'- cCAGAGUUcGUcgacGGCCCGGuCGCGGuCGa -3'
miRNA:   3'- -GUCUCGA-CGu---CCGGGCCuGCGCC-GCc -5'
19751 3' -63.3 NC_004687.1 + 58238 0.74 0.22393
Target:  5'- -uGAGCUGgAGGCCCGG-CGUcaGGCGc -3'
miRNA:   3'- guCUCGACgUCCGGGCCuGCG--CCGCc -5'
19751 3' -63.3 NC_004687.1 + 63447 0.69 0.434678
Target:  5'- aCAGGGCgucauugucgccauaCGGGucCCCGGGCGCGGUGa -3'
miRNA:   3'- -GUCUCGac-------------GUCC--GGGCCUGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 63484 0.69 0.427896
Target:  5'- uCGGAGauggcaCUGCAGGCCgagcaggacucgcUGGAcCGCGcGCGGg -3'
miRNA:   3'- -GUCUC------GACGUCCGG-------------GCCU-GCGC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 63811 0.7 0.356898
Target:  5'- cCGGAGCgGCGacgcuccugaucGGCgCGGACGCGGuCGa -3'
miRNA:   3'- -GUCUCGaCGU------------CCGgGCCUGCGCC-GCc -5'
19751 3' -63.3 NC_004687.1 + 64007 0.69 0.420342
Target:  5'- gAGGGC-GCAGGCCaGGcCGCGcCGGg -3'
miRNA:   3'- gUCUCGaCGUCCGGgCCuGCGCcGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.