miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 564 0.68 0.454516
Target:  5'- gCGGGGUggGCAGuCCCGGAuCGauCGGCGGc -3'
miRNA:   3'- -GUCUCGa-CGUCcGGGCCU-GC--GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 1099 0.66 0.564869
Target:  5'- -uGAGuCUGCuuGGUCCGGGCGCccgGGCc- -3'
miRNA:   3'- guCUC-GACGu-CCGGGCCUGCG---CCGcc -5'
19751 3' -63.3 NC_004687.1 + 4951 0.66 0.593724
Target:  5'- cCGGuGGC-GCAGGggguUCCGGACGCagauccucGGCGGu -3'
miRNA:   3'- -GUC-UCGaCGUCC----GGGCCUGCG--------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 6383 0.68 0.463293
Target:  5'- uGGAGCUGCGGugaGCCCGaGGUGCaucgccaccugGGCGGc -3'
miRNA:   3'- gUCUCGACGUC---CGGGC-CUGCG-----------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 6593 0.66 0.603401
Target:  5'- cCAGAccGCUGCGGGCCaCGua-GuCGGCGa -3'
miRNA:   3'- -GUCU--CGACGUCCGG-GCcugC-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 6870 0.69 0.44583
Target:  5'- cCGGGGCUGCGGGgcgguucguUCUGGugGUGGUu- -3'
miRNA:   3'- -GUCUCGACGUCC---------GGGCCugCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 8148 0.68 0.496509
Target:  5'- gGGcAGCUGCAcgaugaggaacguuGGCUCGGccACGgUGGCGGa -3'
miRNA:   3'- gUC-UCGACGU--------------CCGGGCC--UGC-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 9026 0.66 0.584073
Target:  5'- gGGGGCaGCacGGGCuCCGGAgGUggaGGUGGg -3'
miRNA:   3'- gUCUCGaCG--UCCG-GGCCUgCG---CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 10929 0.66 0.622807
Target:  5'- cCGGGGUgcggaGCuGGCCCuGGuCuCGGCGGa -3'
miRNA:   3'- -GUCUCGa----CGuCCGGG-CCuGcGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 11337 0.66 0.584073
Target:  5'- aUAGAGCUGgcuggcCAGGCCCaGACuGgGGUGc -3'
miRNA:   3'- -GUCUCGAC------GUCCGGGcCUG-CgCCGCc -5'
19751 3' -63.3 NC_004687.1 + 12859 0.68 0.498335
Target:  5'- -cGGGCauccGCuucaacaAGGCgCCGGuGCGCGGCGGc -3'
miRNA:   3'- guCUCGa---CG-------UCCG-GGCC-UGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 17412 0.66 0.622807
Target:  5'- gCAGAGCUGUcGGCCuuggCGGACaGCGa-GGa -3'
miRNA:   3'- -GUCUCGACGuCCGG----GCCUG-CGCcgCC- -5'
19751 3' -63.3 NC_004687.1 + 19609 0.7 0.364452
Target:  5'- aGGAcaucGCgGCGGGCCUGGACGUccugGGcCGGa -3'
miRNA:   3'- gUCU----CGaCGUCCGGGCCUGCG----CC-GCC- -5'
19751 3' -63.3 NC_004687.1 + 20080 0.71 0.3208
Target:  5'- -uGAGCUGCAGGCcuaCCGGgccGCGCaGGCu- -3'
miRNA:   3'- guCUCGACGUCCG---GGCC---UGCG-CCGcc -5'
19751 3' -63.3 NC_004687.1 + 20683 0.73 0.251215
Target:  5'- -cGAaCUGCAGGCUCGGGC-CGaGCGGg -3'
miRNA:   3'- guCUcGACGUCCGGGCCUGcGC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 21524 0.72 0.303136
Target:  5'- -uGGGCgaGCAGGCCUGGACcuuccugucccgccCGGCGGu -3'
miRNA:   3'- guCUCGa-CGUCCGGGCCUGc-------------GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 25469 0.68 0.49925
Target:  5'- --cGGCUGCAccaGCCUGcAUGCGGCGGc -3'
miRNA:   3'- gucUCGACGUc--CGGGCcUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 27857 0.73 0.238338
Target:  5'- -cGGGUugcccuUGCGGGCCCGGgccucguggaagucGCGCGGCGu -3'
miRNA:   3'- guCUCG------ACGUCCGGGCC--------------UGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 29942 0.69 0.436383
Target:  5'- cCAGAaguugauGUUGUAGGCCUuGGCGacCGGCGGg -3'
miRNA:   3'- -GUCU-------CGACGUCCGGGcCUGC--GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 34795 0.66 0.607278
Target:  5'- uGGGGUgaUGgAcgaugaaguccacccGGcCCCGGACGUGGUGGg -3'
miRNA:   3'- gUCUCG--ACgU---------------CC-GGGCCUGCGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.