miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 19609 0.7 0.364452
Target:  5'- aGGAcaucGCgGCGGGCCUGGACGUccugGGcCGGa -3'
miRNA:   3'- gUCU----CGaCGUCCGGGCCUGCG----CC-GCC- -5'
19751 3' -63.3 NC_004687.1 + 142486 0.71 0.307145
Target:  5'- aGGAcgcGCUGCGGGCCUccaaGGCgGCGGUGGa -3'
miRNA:   3'- gUCU---CGACGUCCGGGc---CUG-CGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 20080 0.71 0.3208
Target:  5'- -uGAGCUGCAGGCcuaCCGGgccGCGCaGGCu- -3'
miRNA:   3'- guCUCGACGUCCG---GGCC---UGCG-CCGcc -5'
19751 3' -63.3 NC_004687.1 + 80541 0.71 0.342123
Target:  5'- gCAGAGCgugGCAGG-CCGGAC-CGGaaCGGu -3'
miRNA:   3'- -GUCUCGa--CGUCCgGGCCUGcGCC--GCC- -5'
19751 3' -63.3 NC_004687.1 + 82133 0.71 0.342123
Target:  5'- cCGGuAGCgcgacaGguGGCCguggCGGugGCGGCGGc -3'
miRNA:   3'- -GUC-UCGa-----CguCCGG----GCCugCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 121949 0.7 0.349455
Target:  5'- -cGAGUUGCAugacggagaucuGGCCaaggCGGugGCGGCGa -3'
miRNA:   3'- guCUCGACGU------------CCGG----GCCugCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 43183 0.7 0.356898
Target:  5'- uGGGGCggggGCcGGUCUGGGCGgGGCGc -3'
miRNA:   3'- gUCUCGa---CGuCCGGGCCUGCgCCGCc -5'
19751 3' -63.3 NC_004687.1 + 89407 0.7 0.356898
Target:  5'- --uGGCUGCGcGGCUCGG-CGCGGUGc -3'
miRNA:   3'- gucUCGACGU-CCGGGCCuGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 38722 0.7 0.364452
Target:  5'- aAGcuGCUGCAGGCCUGGggcaucggugagGCGCugaucuccGGCGGc -3'
miRNA:   3'- gUCu-CGACGUCCGGGCC------------UGCG--------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 35036 0.71 0.307145
Target:  5'- gCGGcGGCaGCAGcCCCGGcagccgcagGCGCGGCGGg -3'
miRNA:   3'- -GUC-UCGaCGUCcGGGCC---------UGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 21524 0.72 0.303136
Target:  5'- -uGGGCgaGCAGGCCUGGACcuuccugucccgccCGGCGGu -3'
miRNA:   3'- guCUCGa-CGUCCGGGCCUGc-------------GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 81956 0.72 0.300487
Target:  5'- cCGGuAGCaGCucgaccaacGGCgCCGGugGCGGCGGu -3'
miRNA:   3'- -GUC-UCGaCGu--------CCG-GGCCugCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 118118 0.76 0.156828
Target:  5'- aAGAGCgGCgGGGCCaagaaGGGCGUGGUGGa -3'
miRNA:   3'- gUCUCGaCG-UCCGGg----CCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 145986 0.74 0.203952
Target:  5'- uGGAGCgcccgGCAGGCCCGGACaaccgccCGGUGc -3'
miRNA:   3'- gUCUCGa----CGUCCGGGCCUGc------GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 58238 0.74 0.22393
Target:  5'- -uGAGCUGgAGGCCCGG-CGUcaGGCGc -3'
miRNA:   3'- guCUCGACgUCCGGGCCuGCG--CCGCc -5'
19751 3' -63.3 NC_004687.1 + 20683 0.73 0.251215
Target:  5'- -cGAaCUGCAGGCUCGGGC-CGaGCGGg -3'
miRNA:   3'- guCUcGACGUCCGGGCCUGcGC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 74241 0.73 0.25699
Target:  5'- cCAGGGCU-CGa--CCGGACGCGGCGGc -3'
miRNA:   3'- -GUCUCGAcGUccgGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 73758 0.72 0.281181
Target:  5'- cCGGcGGCaGCGGGCCCGGcggcuacuCGaCGGCGGc -3'
miRNA:   3'- -GUC-UCGaCGUCCGGGCCu-------GC-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 74276 0.72 0.29394
Target:  5'- uCGGucuGGCgucgGCAGGCCUGGGCGCaGCaGGc -3'
miRNA:   3'- -GUC---UCGa---CGUCCGGGCCUGCGcCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 102282 0.72 0.300487
Target:  5'- cCAGGGCcuUGCGGGCCugguuggcgcCGGACuCGGCGa -3'
miRNA:   3'- -GUCUCG--ACGUCCGG----------GCCUGcGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.