miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 133899 1.08 0.000779
Target:  5'- cCAGAGCUGCAGGCCCGGACGCGGCGGc -3'
miRNA:   3'- -GUCUCGACGUCCGGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 135886 0.8 0.078199
Target:  5'- -cGAGCU--GGGCCCGGGCGUGGUGGu -3'
miRNA:   3'- guCUCGAcgUCCGGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 118118 0.76 0.156828
Target:  5'- aAGAGCgGCgGGGCCaagaaGGGCGUGGUGGa -3'
miRNA:   3'- gUCUCGaCG-UCCGGg----CCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 103245 0.75 0.181169
Target:  5'- -cGGGCuUGC-GGCCCGGACGauuagGGCGGu -3'
miRNA:   3'- guCUCG-ACGuCCGGGCCUGCg----CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 140995 0.75 0.189999
Target:  5'- aGGAGCUGauccgacGGCCCuGGAUGCGGCuGGc -3'
miRNA:   3'- gUCUCGACgu-----CCGGG-CCUGCGCCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 145986 0.74 0.203952
Target:  5'- uGGAGCgcccgGCAGGCCCGGACaaccgccCGGUGc -3'
miRNA:   3'- gUCUCGa----CGUCCGGGCCUGc------GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 132481 0.74 0.213741
Target:  5'- cCGGGGCaGCGGGCgCCuGGACGgcgcaGGCGGa -3'
miRNA:   3'- -GUCUCGaCGUCCG-GG-CCUGCg----CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 58238 0.74 0.22393
Target:  5'- -uGAGCUGgAGGCCCGG-CGUcaGGCGc -3'
miRNA:   3'- guCUCGACgUCCGGGCCuGCG--CCGCc -5'
19751 3' -63.3 NC_004687.1 + 27857 0.73 0.238338
Target:  5'- -cGGGUugcccuUGCGGGCCCGGgccucguggaagucGCGCGGCGu -3'
miRNA:   3'- guCUCG------ACGUCCGGGCC--------------UGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 20683 0.73 0.251215
Target:  5'- -cGAaCUGCAGGCUCGGGC-CGaGCGGg -3'
miRNA:   3'- guCUcGACGUCCGGGCCUGcGC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 74241 0.73 0.25699
Target:  5'- cCAGGGCU-CGa--CCGGACGCGGCGGc -3'
miRNA:   3'- -GUCUCGAcGUccgGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 73758 0.72 0.281181
Target:  5'- cCGGcGGCaGCGGGCCCGGcggcuacuCGaCGGCGGc -3'
miRNA:   3'- -GUC-UCGaCGUCCGGGCCu-------GC-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 74276 0.72 0.29394
Target:  5'- uCGGucuGGCgucgGCAGGCCUGGGCGCaGCaGGc -3'
miRNA:   3'- -GUC---UCGa---CGUCCGGGCCUGCGcCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 121052 0.72 0.298511
Target:  5'- cCAGGGUgcccggagGCAGGCCCaGGAUGUcgucgaugaccuccGGCGGc -3'
miRNA:   3'- -GUCUCGa-------CGUCCGGG-CCUGCG--------------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 102282 0.72 0.300487
Target:  5'- cCAGGGCcuUGCGGGCCugguuggcgcCGGACuCGGCGa -3'
miRNA:   3'- -GUCUCG--ACGUCCGG----------GCCUGcGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 81956 0.72 0.300487
Target:  5'- cCGGuAGCaGCucgaccaacGGCgCCGGugGCGGCGGu -3'
miRNA:   3'- -GUC-UCGaCGu--------CCG-GGCCugCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 21524 0.72 0.303136
Target:  5'- -uGGGCgaGCAGGCCUGGACcuuccugucccgccCGGCGGu -3'
miRNA:   3'- guCUCGa-CGUCCGGGCCUGc-------------GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 142486 0.71 0.307145
Target:  5'- aGGAcgcGCUGCGGGCCUccaaGGCgGCGGUGGa -3'
miRNA:   3'- gUCU---CGACGUCCGGGc---CUG-CGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 35036 0.71 0.307145
Target:  5'- gCGGcGGCaGCAGcCCCGGcagccgcagGCGCGGCGGg -3'
miRNA:   3'- -GUC-UCGaCGUCcGGGCC---------UGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 20080 0.71 0.3208
Target:  5'- -uGAGCUGCAGGCcuaCCGGgccGCGCaGGCu- -3'
miRNA:   3'- guCUCGACGUCCG---GGCC---UGCG-CCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.