miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 5' -51.3 NC_004687.1 + 94884 0.67 0.976478
Target:  5'- aGCUGU-GCACcacgUUGGUCaacgaGCCGGAUCu -3'
miRNA:   3'- gCGACAgCGUG----AACUAG-----UGGUCUAGu -5'
19751 5' -51.3 NC_004687.1 + 102828 0.71 0.890701
Target:  5'- aGCUGUcaccggacuccagcCGCagcagcuccuGCUUGGUCACCAGAUg- -3'
miRNA:   3'- gCGACA--------------GCG----------UGAACUAGUGGUCUAgu -5'
19751 5' -51.3 NC_004687.1 + 110521 0.7 0.912348
Target:  5'- cCGgUGucgaUCGCACUgcucgGGUCACCcAGAUCGu -3'
miRNA:   3'- -GCgAC----AGCGUGAa----CUAGUGG-UCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 110584 0.71 0.885049
Target:  5'- uGCUGUCGCGaaUGAcCgagcuggACCAGAUCAa -3'
miRNA:   3'- gCGACAGCGUgaACUaG-------UGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 111823 0.68 0.964626
Target:  5'- aCGCUcggcGUCGCACUUGGccaUCAgCCGGGa-- -3'
miRNA:   3'- -GCGA----CAGCGUGAACU---AGU-GGUCUagu -5'
19751 5' -51.3 NC_004687.1 + 124788 0.67 0.978919
Target:  5'- uCGCgaUCGUACUcgcgguagUGGUgCACCAGGUCGg -3'
miRNA:   3'- -GCGacAGCGUGA--------ACUA-GUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 127237 0.66 0.988104
Target:  5'- aCGCUGggcggUGCGCgaugcgaacgcGAUCACCcGAUCGa -3'
miRNA:   3'- -GCGACa----GCGUGaa---------CUAGUGGuCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 129401 0.74 0.765331
Target:  5'- gGCacGUCGUACUUGGUgGCCAGGUg- -3'
miRNA:   3'- gCGa-CAGCGUGAACUAgUGGUCUAgu -5'
19751 5' -51.3 NC_004687.1 + 131116 0.66 0.988405
Target:  5'- aGCggggGUCgaGCACcUGGaCGCCGGAUCGc -3'
miRNA:   3'- gCGa---CAG--CGUGaACUaGUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 133933 1.09 0.007862
Target:  5'- gCGCUGUCGCACUUGAUCACCAGAUCAc -3'
miRNA:   3'- -GCGACAGCGUGAACUAGUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 135347 0.66 0.991098
Target:  5'- cCGCcGUUGgGCUUG---GCCGGAUCAu -3'
miRNA:   3'- -GCGaCAGCgUGAACuagUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 140035 0.7 0.924129
Target:  5'- uCGCgaaccuuggCGCGCUUGggCGCCAcGAUCAc -3'
miRNA:   3'- -GCGaca------GCGUGAACuaGUGGU-CUAGU- -5'
19751 5' -51.3 NC_004687.1 + 142725 0.71 0.898887
Target:  5'- aCGCUGcucUCGCcgccCUUGGUCACCuggugguGGGUCAg -3'
miRNA:   3'- -GCGAC---AGCGu---GAACUAGUGG-------UCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 143949 0.67 0.985119
Target:  5'- uCGCgGUCuggagaagGCcaGCUUGAUCACCcgguGAUCAg -3'
miRNA:   3'- -GCGaCAG--------CG--UGAACUAGUGGu---CUAGU- -5'
19751 5' -51.3 NC_004687.1 + 150115 0.68 0.961106
Target:  5'- uCGCUGUgGUacagggugaACUUGAgCAUCAGGUCu -3'
miRNA:   3'- -GCGACAgCG---------UGAACUaGUGGUCUAGu -5'
19751 5' -51.3 NC_004687.1 + 153059 0.67 0.985119
Target:  5'- uCGUgGUCGCACUcgGcgCACCcgcagcaguGGAUCAu -3'
miRNA:   3'- -GCGaCAGCGUGAa-CuaGUGG---------UCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.