miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 5' -51.3 NC_004687.1 + 6931 0.69 0.95735
Target:  5'- uGCUGUUGCAC-UGA--GCCAGAa-- -3'
miRNA:   3'- gCGACAGCGUGaACUagUGGUCUagu -5'
19751 5' -51.3 NC_004687.1 + 10766 0.7 0.912348
Target:  5'- uCGCUGUCGUgguACUgGAUgGCCAGccgGUCGa -3'
miRNA:   3'- -GCGACAGCG---UGAaCUAgUGGUC---UAGU- -5'
19751 5' -51.3 NC_004687.1 + 13110 0.67 0.984007
Target:  5'- gCGCUGcgcUCGCGCUcggagggcggcaacGGUCgcuACCAGAUCGa -3'
miRNA:   3'- -GCGAC---AGCGUGAa-------------CUAG---UGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 17306 0.66 0.988405
Target:  5'- cCGCUGUCGCuCUcaacgagcUGGcCACCcuGAUCGa -3'
miRNA:   3'- -GCGACAGCGuGA--------ACUaGUGGu-CUAGU- -5'
19751 5' -51.3 NC_004687.1 + 22741 0.68 0.973836
Target:  5'- cCGCUGUCGaCGCccUGAccggCGCCGuGGUCGa -3'
miRNA:   3'- -GCGACAGC-GUGa-ACUa---GUGGU-CUAGU- -5'
19751 5' -51.3 NC_004687.1 + 37524 0.67 0.978919
Target:  5'- uGCgggCGUACUUGGcCAUCGGGUCGu -3'
miRNA:   3'- gCGacaGCGUGAACUaGUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 45313 0.7 0.924129
Target:  5'- cCGUUGUcgaagaCGCGCUUGAUCugguCCAGcUCGg -3'
miRNA:   3'- -GCGACA------GCGUGAACUAGu---GGUCuAGU- -5'
19751 5' -51.3 NC_004687.1 + 45685 0.68 0.964285
Target:  5'- aCGCUGaaaccacgccuucUCGUcCUUGucgCGCCAGGUCGa -3'
miRNA:   3'- -GCGAC-------------AGCGuGAACua-GUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 48908 0.66 0.988405
Target:  5'- gCGCcgUGUCGUAUcgcaucugGAgCACCAGAUCGc -3'
miRNA:   3'- -GCG--ACAGCGUGaa------CUaGUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 51311 0.66 0.988405
Target:  5'- cCGCcGcCGCGCgUGccGUCugCAGAUCGu -3'
miRNA:   3'- -GCGaCaGCGUGaAC--UAGugGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 57038 0.68 0.973836
Target:  5'- gGCUGggCGCGCUUGuUgGCCAuGUCGc -3'
miRNA:   3'- gCGACa-GCGUGAACuAgUGGUcUAGU- -5'
19751 5' -51.3 NC_004687.1 + 68676 0.66 0.986841
Target:  5'- uGCcagGUCGCGCgcgcgGGUgaGCCGGAUCu -3'
miRNA:   3'- gCGa--CAGCGUGaa---CUAg-UGGUCUAGu -5'
19751 5' -51.3 NC_004687.1 + 71513 0.68 0.961106
Target:  5'- gCGCcagGUCGCGCUgggcgaGGUCACCugccgcaagcuGAUCAa -3'
miRNA:   3'- -GCGa--CAGCGUGAa-----CUAGUGGu----------CUAGU- -5'
19751 5' -51.3 NC_004687.1 + 82269 0.71 0.899553
Target:  5'- uGCUGUCGCGC---AUCGCCuGGUUg -3'
miRNA:   3'- gCGACAGCGUGaacUAGUGGuCUAGu -5'
19751 5' -51.3 NC_004687.1 + 82437 0.7 0.906076
Target:  5'- aCGCgaGUCGCGC--GAUCACCGaGUCAu -3'
miRNA:   3'- -GCGa-CAGCGUGaaCUAGUGGUcUAGU- -5'
19751 5' -51.3 NC_004687.1 + 82895 0.67 0.976478
Target:  5'- aGCUGUgCGUACUcGcgCuCCAGAUCc -3'
miRNA:   3'- gCGACA-GCGUGAaCuaGuGGUCUAGu -5'
19751 5' -51.3 NC_004687.1 + 83897 0.66 0.990976
Target:  5'- uGCUG-CGCGgcaccacCUUGcUgGCCGGAUCAg -3'
miRNA:   3'- gCGACaGCGU-------GAACuAgUGGUCUAGU- -5'
19751 5' -51.3 NC_004687.1 + 88398 0.68 0.967917
Target:  5'- aCGgUGgCGCGCgaGAUCGCCGG-UCGg -3'
miRNA:   3'- -GCgACaGCGUGaaCUAGUGGUCuAGU- -5'
19751 5' -51.3 NC_004687.1 + 89494 0.66 0.992025
Target:  5'- uCGCUGUcCGgGCUgacgccauaagcGGUCACCGGGUa- -3'
miRNA:   3'- -GCGACA-GCgUGAa-----------CUAGUGGUCUAgu -5'
19751 5' -51.3 NC_004687.1 + 93134 0.66 0.989821
Target:  5'- uCGgUGUUGCACgUGAUCuuguuCCGGGUg- -3'
miRNA:   3'- -GCgACAGCGUGaACUAGu----GGUCUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.