Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19751 | 5' | -51.3 | NC_004687.1 | + | 133933 | 1.09 | 0.007862 |
Target: 5'- gCGCUGUCGCACUUGAUCACCAGAUCAc -3' miRNA: 3'- -GCGACAGCGUGAACUAGUGGUCUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 129401 | 0.74 | 0.765331 |
Target: 5'- gGCacGUCGUACUUGGUgGCCAGGUg- -3' miRNA: 3'- gCGa-CAGCGUGAACUAgUGGUCUAgu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 110584 | 0.71 | 0.885049 |
Target: 5'- uGCUGUCGCGaaUGAcCgagcuggACCAGAUCAa -3' miRNA: 3'- gCGACAGCGUgaACUaG-------UGGUCUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 102828 | 0.71 | 0.890701 |
Target: 5'- aGCUGUcaccggacuccagcCGCagcagcuccuGCUUGGUCACCAGAUg- -3' miRNA: 3'- gCGACA--------------GCG----------UGAACUAGUGGUCUAgu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 142725 | 0.71 | 0.898887 |
Target: 5'- aCGCUGcucUCGCcgccCUUGGUCACCuggugguGGGUCAg -3' miRNA: 3'- -GCGAC---AGCGu---GAACUAGUGG-------UCUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 82269 | 0.71 | 0.899553 |
Target: 5'- uGCUGUCGCGC---AUCGCCuGGUUg -3' miRNA: 3'- gCGACAGCGUGaacUAGUGGuCUAGu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 82437 | 0.7 | 0.906076 |
Target: 5'- aCGCgaGUCGCGC--GAUCACCGaGUCAu -3' miRNA: 3'- -GCGa-CAGCGUGaaCUAGUGGUcUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 110521 | 0.7 | 0.912348 |
Target: 5'- cCGgUGucgaUCGCACUgcucgGGUCACCcAGAUCGu -3' miRNA: 3'- -GCgAC----AGCGUGAa----CUAGUGG-UCUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 10766 | 0.7 | 0.912348 |
Target: 5'- uCGCUGUCGUgguACUgGAUgGCCAGccgGUCGa -3' miRNA: 3'- -GCGACAGCG---UGAaCUAgUGGUC---UAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 45313 | 0.7 | 0.924129 |
Target: 5'- cCGUUGUcgaagaCGCGCUUGAUCugguCCAGcUCGg -3' miRNA: 3'- -GCGACA------GCGUGAACUAGu---GGUCuAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 140035 | 0.7 | 0.924129 |
Target: 5'- uCGCgaaccuuggCGCGCUUGggCGCCAcGAUCAc -3' miRNA: 3'- -GCGaca------GCGUGAACuaGUGGU-CUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 6931 | 0.69 | 0.95735 |
Target: 5'- uGCUGUUGCAC-UGA--GCCAGAa-- -3' miRNA: 3'- gCGACAGCGUGaACUagUGGUCUagu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 150115 | 0.68 | 0.961106 |
Target: 5'- uCGCUGUgGUacagggugaACUUGAgCAUCAGGUCu -3' miRNA: 3'- -GCGACAgCG---------UGAACUaGUGGUCUAGu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 71513 | 0.68 | 0.961106 |
Target: 5'- gCGCcagGUCGCGCUgggcgaGGUCACCugccgcaagcuGAUCAa -3' miRNA: 3'- -GCGa--CAGCGUGAa-----CUAGUGGu----------CUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 45685 | 0.68 | 0.964285 |
Target: 5'- aCGCUGaaaccacgccuucUCGUcCUUGucgCGCCAGGUCGa -3' miRNA: 3'- -GCGAC-------------AGCGuGAACua-GUGGUCUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 111823 | 0.68 | 0.964626 |
Target: 5'- aCGCUcggcGUCGCACUUGGccaUCAgCCGGGa-- -3' miRNA: 3'- -GCGA----CAGCGUGAACU---AGU-GGUCUagu -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 88398 | 0.68 | 0.967917 |
Target: 5'- aCGgUGgCGCGCgaGAUCGCCGG-UCGg -3' miRNA: 3'- -GCgACaGCGUGaaCUAGUGGUCuAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 22741 | 0.68 | 0.973836 |
Target: 5'- cCGCUGUCGaCGCccUGAccggCGCCGuGGUCGa -3' miRNA: 3'- -GCGACAGC-GUGa-ACUa---GUGGU-CUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 57038 | 0.68 | 0.973836 |
Target: 5'- gGCUGggCGCGCUUGuUgGCCAuGUCGc -3' miRNA: 3'- gCGACa-GCGUGAACuAgUGGUcUAGU- -5' |
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19751 | 5' | -51.3 | NC_004687.1 | + | 94884 | 0.67 | 0.976478 |
Target: 5'- aGCUGU-GCACcacgUUGGUCaacgaGCCGGAUCu -3' miRNA: 3'- gCGACAgCGUG----AACUAG-----UGGUCUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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