miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 5' -53.8 NC_004687.1 + 130040 1.09 0.003796
Target:  5'- gACAACUGCAGCAGCGAGAUCUGCGUGg -3'
miRNA:   3'- -UGUUGACGUCGUCGCUCUAGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 31492 0.78 0.356529
Target:  5'- cGCGcGCUGCAGCAGCGAGAcCUcGCGg- -3'
miRNA:   3'- -UGU-UGACGUCGUCGCUCUaGA-CGCac -5'
19753 5' -53.8 NC_004687.1 + 153822 0.76 0.44403
Target:  5'- aACAGCaGCGGCAGCGAGAgcgGCGa- -3'
miRNA:   3'- -UGUUGaCGUCGUCGCUCUagaCGCac -5'
19753 5' -53.8 NC_004687.1 + 70511 0.73 0.657346
Target:  5'- uACAGCaGCAGCAGCGAGAUggcCaGCGc- -3'
miRNA:   3'- -UGUUGaCGUCGUCGCUCUA---GaCGCac -5'
19753 5' -53.8 NC_004687.1 + 52226 0.71 0.749891
Target:  5'- -----aGCAGCAGgGAGAUCUuCGUGa -3'
miRNA:   3'- uguugaCGUCGUCgCUCUAGAcGCAC- -5'
19753 5' -53.8 NC_004687.1 + 133561 0.71 0.769507
Target:  5'- -uGACUGCGGCAGCGuGGGcCUGCu-- -3'
miRNA:   3'- ugUUGACGUCGUCGC-UCUaGACGcac -5'
19753 5' -53.8 NC_004687.1 + 1745 0.7 0.816109
Target:  5'- gGCAGCUGgAGCgaugAGCGAcGAgUUGCGUGc -3'
miRNA:   3'- -UGUUGACgUCG----UCGCU-CUaGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 3249 0.7 0.816109
Target:  5'- aACAACUGCGGCAGCuug----GCGUGc -3'
miRNA:   3'- -UGUUGACGUCGUCGcucuagaCGCAC- -5'
19753 5' -53.8 NC_004687.1 + 96538 0.69 0.831004
Target:  5'- gGCGAuCUGCAGCGGCGGGucgaagcucuccuuGUgaGCGUc -3'
miRNA:   3'- -UGUU-GACGUCGUCGCUC--------------UAgaCGCAc -5'
19753 5' -53.8 NC_004687.1 + 83811 0.69 0.842023
Target:  5'- uGCGGCUG-GGCAGCGugccGGUCUGCa-- -3'
miRNA:   3'- -UGUUGACgUCGUCGCu---CUAGACGcac -5'
19753 5' -53.8 NC_004687.1 + 144486 0.69 0.850267
Target:  5'- uACAACcGgGGCcacggcgacuucGGCGAGAUCUgggGCGUGg -3'
miRNA:   3'- -UGUUGaCgUCG------------UCGCUCUAGA---CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 25477 0.69 0.858303
Target:  5'- cCAGcCUGCAuGCGGCGGcGAUCgGCGUc -3'
miRNA:   3'- uGUU-GACGU-CGUCGCU-CUAGaCGCAc -5'
19753 5' -53.8 NC_004687.1 + 538 0.68 0.873717
Target:  5'- gACGAUguaggucgGCAGCGGCGGGggCgGgGUGg -3'
miRNA:   3'- -UGUUGa-------CGUCGUCGCUCuaGaCgCAC- -5'
19753 5' -53.8 NC_004687.1 + 147547 0.68 0.888215
Target:  5'- aGCAGgUGCAGCAGCGGGccaugaUGCuUGu -3'
miRNA:   3'- -UGUUgACGUCGUCGCUCuag---ACGcAC- -5'
19753 5' -53.8 NC_004687.1 + 7158 0.68 0.895108
Target:  5'- -gAAUgGCAGCGGCGA---CUGCGUGu -3'
miRNA:   3'- ugUUGaCGUCGUCGCUcuaGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 34580 0.68 0.901104
Target:  5'- uGCGgguGCUGCcgagaagGGCGGCGAGAUCUcCGa- -3'
miRNA:   3'- -UGU---UGACG-------UCGUCGCUCUAGAcGCac -5'
19753 5' -53.8 NC_004687.1 + 40943 0.67 0.908161
Target:  5'- aGCAACUucucCGaCAGCcGGGUCUGCGUGg -3'
miRNA:   3'- -UGUUGAc---GUcGUCGcUCUAGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 26179 0.67 0.908161
Target:  5'- uCAGCUGCggaugcgcuaugAGC-GCGAGGUCUacaaccguaacgGCGUGg -3'
miRNA:   3'- uGUUGACG------------UCGuCGCUCUAGA------------CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 91283 0.67 0.914314
Target:  5'- cGCAGCUGCcacaugauguuGGCcGCGuuGGUCUGCGc- -3'
miRNA:   3'- -UGUUGACG-----------UCGuCGCu-CUAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 136271 0.67 0.914314
Target:  5'- uACAGCUuCAGUcaCGAGGUCgaggGCGUGg -3'
miRNA:   3'- -UGUUGAcGUCGucGCUCUAGa---CGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.