Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19753 | 5' | -53.8 | NC_004687.1 | + | 52226 | 0.71 | 0.749891 |
Target: 5'- -----aGCAGCAGgGAGAUCUuCGUGa -3' miRNA: 3'- uguugaCGUCGUCgCUCUAGAcGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 154661 | 0.66 | 0.95033 |
Target: 5'- gGC-GCUGCGcuacGCuGCGAGcGUCUGCGg- -3' miRNA: 3'- -UGuUGACGU----CGuCGCUC-UAGACGCac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 143170 | 0.66 | 0.95033 |
Target: 5'- gACGG-UGCucacCGGCGGGGUCUcGCGUGg -3' miRNA: 3'- -UGUUgACGuc--GUCGCUCUAGA-CGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 124440 | 0.66 | 0.945938 |
Target: 5'- cGCuGCUGCAGC-GCGcGGUCcGCGa- -3' miRNA: 3'- -UGuUGACGUCGuCGCuCUAGaCGCac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 18995 | 0.66 | 0.941297 |
Target: 5'- cGCGACUGCAucgaaGGCGAGcgCUGgGa- -3' miRNA: 3'- -UGUUGACGUcg---UCGCUCuaGACgCac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 62713 | 0.67 | 0.925866 |
Target: 5'- uACAccuACUGC-GCAGCGGaagucccugcgcGAaCUGCGUGa -3' miRNA: 3'- -UGU---UGACGuCGUCGCU------------CUaGACGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 94404 | 0.67 | 0.919638 |
Target: 5'- aGCu-CUGCccgccccAGCccuGCGAGAUCUGCGa- -3' miRNA: 3'- -UGuuGACG-------UCGu--CGCUCUAGACGCac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 136271 | 0.67 | 0.914314 |
Target: 5'- uACAGCUuCAGUcaCGAGGUCgaggGCGUGg -3' miRNA: 3'- -UGUUGAcGUCGucGCUCUAGa---CGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 40943 | 0.67 | 0.908161 |
Target: 5'- aGCAACUucucCGaCAGCcGGGUCUGCGUGg -3' miRNA: 3'- -UGUUGAc---GUcGUCGcUCUAGACGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 26179 | 0.67 | 0.908161 |
Target: 5'- uCAGCUGCggaugcgcuaugAGC-GCGAGGUCUacaaccguaacgGCGUGg -3' miRNA: 3'- uGUUGACG------------UCGuCGCUCUAGA------------CGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 133561 | 0.71 | 0.769507 |
Target: 5'- -uGACUGCGGCAGCGuGGGcCUGCu-- -3' miRNA: 3'- ugUUGACGUCGUCGC-UCUaGACGcac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 1745 | 0.7 | 0.816109 |
Target: 5'- gGCAGCUGgAGCgaugAGCGAcGAgUUGCGUGc -3' miRNA: 3'- -UGUUGACgUCG----UCGCU-CUaGACGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 83811 | 0.69 | 0.842023 |
Target: 5'- uGCGGCUG-GGCAGCGugccGGUCUGCa-- -3' miRNA: 3'- -UGUUGACgUCGUCGCu---CUAGACGcac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 144486 | 0.69 | 0.850267 |
Target: 5'- uACAACcGgGGCcacggcgacuucGGCGAGAUCUgggGCGUGg -3' miRNA: 3'- -UGUUGaCgUCG------------UCGCUCUAGA---CGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 25477 | 0.69 | 0.858303 |
Target: 5'- cCAGcCUGCAuGCGGCGGcGAUCgGCGUc -3' miRNA: 3'- uGUU-GACGU-CGUCGCU-CUAGaCGCAc -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 7158 | 0.68 | 0.895108 |
Target: 5'- -gAAUgGCAGCGGCGA---CUGCGUGu -3' miRNA: 3'- ugUUGaCGUCGUCGCUcuaGACGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 34580 | 0.68 | 0.901104 |
Target: 5'- uGCGgguGCUGCcgagaagGGCGGCGAGAUCUcCGa- -3' miRNA: 3'- -UGU---UGACG-------UCGUCGCUCUAGAcGCac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 130040 | 1.09 | 0.003796 |
Target: 5'- gACAACUGCAGCAGCGAGAUCUGCGUGg -3' miRNA: 3'- -UGUUGACGUCGUCGCUCUAGACGCAC- -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 54976 | 0.66 | 0.954478 |
Target: 5'- cCAGCUGCAGUGGUGGGGcCUGa--- -3' miRNA: 3'- uGUUGACGUCGUCGCUCUaGACgcac -5' |
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19753 | 5' | -53.8 | NC_004687.1 | + | 18953 | 0.66 | 0.95033 |
Target: 5'- gACGGCUGCcgugcGGCGGuCGGGAUCgGCc-- -3' miRNA: 3'- -UGUUGACG-----UCGUC-GCUCUAGaCGcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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