miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20406 3' -62.7 NC_004688.1 + 1974 1.09 0.0005
Target:  5'- uCACCAGAUCGGCCCCCAUGCCCCGGCc -3'
miRNA:   3'- -GUGGUCUAGCCGGGGGUACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 96829 0.77 0.116711
Target:  5'- aCACCAGGUCGGCguucugCCCGUGgUUCGGCg -3'
miRNA:   3'- -GUGGUCUAGCCGg-----GGGUACgGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 39186 0.75 0.154076
Target:  5'- cCGCCGGuuugGUCGGCggcgcuggaCCCGUugGCCCCGGCa -3'
miRNA:   3'- -GUGGUC----UAGCCGg--------GGGUA--CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 58984 0.73 0.201965
Target:  5'- cCGCCcuaacGAUCGuGCCCUCuccUGCCUCGGCu -3'
miRNA:   3'- -GUGGu----CUAGC-CGGGGGu--ACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 88777 0.73 0.212465
Target:  5'- cCACCAGGUUGcucuCCCCCGUGCacagggcaugauggaCCGGCc -3'
miRNA:   3'- -GUGGUCUAGCc---GGGGGUACGg--------------GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 59986 0.72 0.24972
Target:  5'- aGCCAGcUCGGCCCgagggugCCAccGCgCCGGCg -3'
miRNA:   3'- gUGGUCuAGCCGGG-------GGUa-CGgGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 87259 0.71 0.25623
Target:  5'- cCGCCGGGcuccaGGCCCCCccGCCCacgccagGGCg -3'
miRNA:   3'- -GUGGUCUag---CCGGGGGuaCGGGg------CCG- -5'
20406 3' -62.7 NC_004688.1 + 35802 0.71 0.25623
Target:  5'- -cCCAGAaucguugucagcUUGGacgacgacgcCCCCCcgGCCCCGGCc -3'
miRNA:   3'- guGGUCU------------AGCC----------GGGGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 63948 0.71 0.262879
Target:  5'- uGCCGaacacGAUCGcGCCCCCAcacuggccggggaccGCCUCGGCg -3'
miRNA:   3'- gUGGU-----CUAGC-CGGGGGUa--------------CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 65701 0.71 0.274693
Target:  5'- aCGCCGGGgucgccCGGCgCCUAgcuugcgGCCUCGGCg -3'
miRNA:   3'- -GUGGUCUa-----GCCGgGGGUa------CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 52103 0.71 0.281079
Target:  5'- gACC-GAUUGGCCUggUgGUGCCCgGGCa -3'
miRNA:   3'- gUGGuCUAGCCGGG--GgUACGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 39006 0.7 0.307803
Target:  5'- aGCCuGAcgacgCGGCCCCCuuacCCCCGGg -3'
miRNA:   3'- gUGGuCUa----GCCGGGGGuac-GGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 24000 0.7 0.314781
Target:  5'- gGCCGGGauacugaCGGCCgCCAgcGCCCCGGa -3'
miRNA:   3'- gUGGUCUa------GCCGGgGGUa-CGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 100034 0.7 0.321877
Target:  5'- -uCCGGGUgGuuGCCCCCAU-CCCCGGg -3'
miRNA:   3'- guGGUCUAgC--CGGGGGUAcGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 26376 0.7 0.321877
Target:  5'- uGCCGGAcCGGCCaucgccgagCCCGcGCCCaUGGCg -3'
miRNA:   3'- gUGGUCUaGCCGG---------GGGUaCGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 7858 0.7 0.321877
Target:  5'- gGCCAuagcguUCGGCCgCCA-GCCCCaGGCc -3'
miRNA:   3'- gUGGUcu----AGCCGGgGGUaCGGGG-CCG- -5'
20406 3' -62.7 NC_004688.1 + 280 0.7 0.336426
Target:  5'- -uUCGGGgggCGGCCCC---GCCCCGGUu -3'
miRNA:   3'- guGGUCUa--GCCGGGGguaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 19691 0.7 0.336426
Target:  5'- uCGCCcauuGggCGGaaagauucagaCCCCCggGCCCCGGUg -3'
miRNA:   3'- -GUGGu---CuaGCC-----------GGGGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 6695 0.69 0.348406
Target:  5'- gCGCCGccgCGGCCCaCCAggaucucuucgggGCCCCaGGCg -3'
miRNA:   3'- -GUGGUcuaGCCGGG-GGUa------------CGGGG-CCG- -5'
20406 3' -62.7 NC_004688.1 + 95505 0.69 0.351448
Target:  5'- cCGCCGGAgUGGCgcaacCCCCAgGCCCCgccauuccGGCg -3'
miRNA:   3'- -GUGGUCUaGCCG-----GGGGUaCGGGG--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.