Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20406 | 3' | -62.7 | NC_004688.1 | + | 14862 | 0.66 | 0.544864 |
Target: 5'- gGCCAGAggaGGCUcgacaCCCAaggcagacGCgCCCGGCg -3' miRNA: 3'- gUGGUCUag-CCGG-----GGGUa-------CG-GGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 24000 | 0.7 | 0.314781 |
Target: 5'- gGCCGGGauacugaCGGCCgCCAgcGCCCCGGa -3' miRNA: 3'- gUGGUCUa------GCCGGgGGUa-CGGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 100034 | 0.7 | 0.321877 |
Target: 5'- -uCCGGGUgGuuGCCCCCAU-CCCCGGg -3' miRNA: 3'- guGGUCUAgC--CGGGGGUAcGGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 26376 | 0.7 | 0.321877 |
Target: 5'- uGCCGGAcCGGCCaucgccgagCCCGcGCCCaUGGCg -3' miRNA: 3'- gUGGUCUaGCCGG---------GGGUaCGGG-GCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 7858 | 0.7 | 0.321877 |
Target: 5'- gGCCAuagcguUCGGCCgCCA-GCCCCaGGCc -3' miRNA: 3'- gUGGUcu----AGCCGGgGGUaCGGGG-CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 19691 | 0.7 | 0.336426 |
Target: 5'- uCGCCcauuGggCGGaaagauucagaCCCCCggGCCCCGGUg -3' miRNA: 3'- -GUGGu---CuaGCC-----------GGGGGuaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 280 | 0.7 | 0.336426 |
Target: 5'- -uUCGGGgggCGGCCCC---GCCCCGGUu -3' miRNA: 3'- guGGUCUa--GCCGGGGguaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 6695 | 0.69 | 0.348406 |
Target: 5'- gCGCCGccgCGGCCCaCCAggaucucuucgggGCCCCaGGCg -3' miRNA: 3'- -GUGGUcuaGCCGGG-GGUa------------CGGGG-CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 95505 | 0.69 | 0.351448 |
Target: 5'- cCGCCGGAgUGGCgcaacCCCCAgGCCCCgccauuccGGCg -3' miRNA: 3'- -GUGGUCUaGCCG-----GGGGUaCGGGG--------CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 39006 | 0.7 | 0.307803 |
Target: 5'- aGCCuGAcgacgCGGCCCCCuuacCCCCGGg -3' miRNA: 3'- gUGGuCUa----GCCGGGGGuac-GGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 52103 | 0.71 | 0.281079 |
Target: 5'- gACC-GAUUGGCCUggUgGUGCCCgGGCa -3' miRNA: 3'- gUGGuCUAGCCGGG--GgUACGGGgCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 65701 | 0.71 | 0.274693 |
Target: 5'- aCGCCGGGgucgccCGGCgCCUAgcuugcgGCCUCGGCg -3' miRNA: 3'- -GUGGUCUa-----GCCGgGGGUa------CGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 96829 | 0.77 | 0.116711 |
Target: 5'- aCACCAGGUCGGCguucugCCCGUGgUUCGGCg -3' miRNA: 3'- -GUGGUCUAGCCGg-----GGGUACgGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 39186 | 0.75 | 0.154076 |
Target: 5'- cCGCCGGuuugGUCGGCggcgcuggaCCCGUugGCCCCGGCa -3' miRNA: 3'- -GUGGUC----UAGCCGg--------GGGUA--CGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 58984 | 0.73 | 0.201965 |
Target: 5'- cCGCCcuaacGAUCGuGCCCUCuccUGCCUCGGCu -3' miRNA: 3'- -GUGGu----CUAGC-CGGGGGu--ACGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 88777 | 0.73 | 0.212465 |
Target: 5'- cCACCAGGUUGcucuCCCCCGUGCacagggcaugauggaCCGGCc -3' miRNA: 3'- -GUGGUCUAGCc---GGGGGUACGg--------------GGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 59986 | 0.72 | 0.24972 |
Target: 5'- aGCCAGcUCGGCCCgagggugCCAccGCgCCGGCg -3' miRNA: 3'- gUGGUCuAGCCGGG-------GGUa-CGgGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 87259 | 0.71 | 0.25623 |
Target: 5'- cCGCCGGGcuccaGGCCCCCccGCCCacgccagGGCg -3' miRNA: 3'- -GUGGUCUag---CCGGGGGuaCGGGg------CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 35802 | 0.71 | 0.25623 |
Target: 5'- -cCCAGAaucguugucagcUUGGacgacgacgcCCCCCcgGCCCCGGCc -3' miRNA: 3'- guGGUCU------------AGCC----------GGGGGuaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 63948 | 0.71 | 0.262879 |
Target: 5'- uGCCGaacacGAUCGcGCCCCCAcacuggccggggaccGCCUCGGCg -3' miRNA: 3'- gUGGU-----CUAGC-CGGGGGUa--------------CGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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