Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20406 | 3' | -62.7 | NC_004688.1 | + | 74699 | 0.67 | 0.460127 |
Target: 5'- gACCAGGcgggugccgUCGGCgCCgAUGCCgauaUCGGCc -3' miRNA: 3'- gUGGUCU---------AGCCGgGGgUACGG----GGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 38974 | 0.67 | 0.460127 |
Target: 5'- gCGCCGGGgauaacgaCGGCCCCgGcaaCCCCGGa -3' miRNA: 3'- -GUGGUCUa-------GCCGGGGgUac-GGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 26051 | 0.67 | 0.460127 |
Target: 5'- gCACCGGGggcaCGGCUCCgGggagGCCCgugGGCa -3' miRNA: 3'- -GUGGUCUa---GCCGGGGgUa---CGGGg--CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 4388 | 0.67 | 0.469215 |
Target: 5'- gCGCCucagaaaugagaGGGUugaUGGUCUCgGUGCCCUGGCu -3' miRNA: 3'- -GUGG------------UCUA---GCCGGGGgUACGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 5499 | 0.67 | 0.478393 |
Target: 5'- aCGCCGccGUCGGagUCCAUGaUCCCGGCg -3' miRNA: 3'- -GUGGUc-UAGCCggGGGUAC-GGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 48914 | 0.67 | 0.456519 |
Target: 5'- gGCUGGAgcugguggguucgCGGUCCCUGUGCCgCGGg -3' miRNA: 3'- gUGGUCUa------------GCCGGGGGUACGGgGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 66238 | 0.67 | 0.442238 |
Target: 5'- gACCGGGUCGaaaaugaCCUCA-GCCCCGGa -3' miRNA: 3'- gUGGUCUAGCcg-----GGGGUaCGGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 24445 | 0.67 | 0.469215 |
Target: 5'- gGCguGAUCGGCCCC-AUGgggacaucgauCUUCGGCa -3' miRNA: 3'- gUGguCUAGCCGGGGgUAC-----------GGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 92968 | 0.68 | 0.433443 |
Target: 5'- aCACCAG--CGGCUCUacgGCCgCGGCg -3' miRNA: 3'- -GUGGUCuaGCCGGGGguaCGGgGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 43874 | 0.68 | 0.407679 |
Target: 5'- gCGCgAGAUCcGCCCCgAaGCCgggaCCGGCa -3' miRNA: 3'- -GUGgUCUAGcCGGGGgUaCGG----GGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 48197 | 0.68 | 0.407679 |
Target: 5'- uGCUGGAU-GGCCgCCAcccGCCCgGGCa -3' miRNA: 3'- gUGGUCUAgCCGGgGGUa--CGGGgCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 89329 | 0.68 | 0.399307 |
Target: 5'- --gCAG-UCGGCCaggaCCuugAUGUCCCGGCg -3' miRNA: 3'- gugGUCuAGCCGGg---GG---UACGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 104977 | 0.68 | 0.391046 |
Target: 5'- aGCC-GAUgGGUacgCCCAUcCCCCGGCg -3' miRNA: 3'- gUGGuCUAgCCGg--GGGUAcGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 6150 | 0.68 | 0.416161 |
Target: 5'- gCGCU-GGUCGGCCgCC--GUCCCGGUg -3' miRNA: 3'- -GUGGuCUAGCCGGgGGuaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 6695 | 0.69 | 0.348406 |
Target: 5'- gCGCCGccgCGGCCCaCCAggaucucuucgggGCCCCaGGCg -3' miRNA: 3'- -GUGGUcuaGCCGGG-GGUa------------CGGGG-CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 95505 | 0.69 | 0.351448 |
Target: 5'- cCGCCGGAgUGGCgcaacCCCCAgGCCCCgccauuccGGCg -3' miRNA: 3'- -GUGGUCUaGCCG-----GGGGUaCGGGG--------CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 53653 | 0.69 | 0.366941 |
Target: 5'- cCugCGGGUCcGCCCag--GCUCCGGCa -3' miRNA: 3'- -GugGUCUAGcCGGGgguaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 26376 | 0.7 | 0.321877 |
Target: 5'- uGCCGGAcCGGCCaucgccgagCCCGcGCCCaUGGCg -3' miRNA: 3'- gUGGUCUaGCCGG---------GGGUaCGGG-GCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 100034 | 0.7 | 0.321877 |
Target: 5'- -uCCGGGUgGuuGCCCCCAU-CCCCGGg -3' miRNA: 3'- guGGUCUAgC--CGGGGGUAcGGGGCCg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 24000 | 0.7 | 0.314781 |
Target: 5'- gGCCGGGauacugaCGGCCgCCAgcGCCCCGGa -3' miRNA: 3'- gUGGUCUa------GCCGGgGGUa-CGGGGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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