miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20406 3' -62.7 NC_004688.1 + 37885 0.66 0.544864
Target:  5'- gGCgAGGUCGGCCUuaucguCCA-GCCCCucauGCg -3'
miRNA:   3'- gUGgUCUAGCCGGG------GGUaCGGGGc---CG- -5'
20406 3' -62.7 NC_004688.1 + 38974 0.67 0.460127
Target:  5'- gCGCCGGGgauaacgaCGGCCCCgGcaaCCCCGGa -3'
miRNA:   3'- -GUGGUCUa-------GCCGGGGgUac-GGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 39006 0.7 0.307803
Target:  5'- aGCCuGAcgacgCGGCCCCCuuacCCCCGGg -3'
miRNA:   3'- gUGGuCUa----GCCGGGGGuac-GGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 39186 0.75 0.154076
Target:  5'- cCGCCGGuuugGUCGGCggcgcuggaCCCGUugGCCCCGGCa -3'
miRNA:   3'- -GUGGUC----UAGCCGg--------GGGUA--CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 43845 0.66 0.544864
Target:  5'- nCACCGuc-CGGCaCCCCAgUGCCgUUGGCg -3'
miRNA:   3'- -GUGGUcuaGCCG-GGGGU-ACGG-GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 43874 0.68 0.407679
Target:  5'- gCGCgAGAUCcGCCCCgAaGCCgggaCCGGCa -3'
miRNA:   3'- -GUGgUCUAGcCGGGGgUaCGG----GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 48197 0.68 0.407679
Target:  5'- uGCUGGAU-GGCCgCCAcccGCCCgGGCa -3'
miRNA:   3'- gUGGUCUAgCCGGgGGUa--CGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 48914 0.67 0.456519
Target:  5'- gGCUGGAgcugguggguucgCGGUCCCUGUGCCgCGGg -3'
miRNA:   3'- gUGGUCUa------------GCCGGGGGUACGGgGCCg -5'
20406 3' -62.7 NC_004688.1 + 49971 0.67 0.442238
Target:  5'- gCugCGGGUCGGCgaaaUCAaGCCCUGGUa -3'
miRNA:   3'- -GugGUCUAGCCGgg--GGUaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 52103 0.71 0.281079
Target:  5'- gACC-GAUUGGCCUggUgGUGCCCgGGCa -3'
miRNA:   3'- gUGGuCUAGCCGGG--GgUACGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 52844 0.66 0.525518
Target:  5'- aACC---UCGGCCCCguUcaGgCCCGGCg -3'
miRNA:   3'- gUGGucuAGCCGGGGguA--CgGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 53653 0.69 0.366941
Target:  5'- cCugCGGGUCcGCCCag--GCUCCGGCa -3'
miRNA:   3'- -GugGUCUAGcCGGGgguaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 58984 0.73 0.201965
Target:  5'- cCGCCcuaacGAUCGuGCCCUCuccUGCCUCGGCu -3'
miRNA:   3'- -GUGGu----CUAGC-CGGGGGu--ACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 59986 0.72 0.24972
Target:  5'- aGCCAGcUCGGCCCgagggugCCAccGCgCCGGCg -3'
miRNA:   3'- gUGGUCuAGCCGGG-------GGUa-CGgGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 63948 0.71 0.262879
Target:  5'- uGCCGaacacGAUCGcGCCCCCAcacuggccggggaccGCCUCGGCg -3'
miRNA:   3'- gUGGU-----CUAGC-CGGGGGUa--------------CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 65701 0.71 0.274693
Target:  5'- aCGCCGGGgucgccCGGCgCCUAgcuugcgGCCUCGGCg -3'
miRNA:   3'- -GUGGUCUa-----GCCGgGGGUa------CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 66238 0.67 0.442238
Target:  5'- gACCGGGUCGaaaaugaCCUCA-GCCCCGGa -3'
miRNA:   3'- gUGGUCUAGCcg-----GGGGUaCGGGGCCg -5'
20406 3' -62.7 NC_004688.1 + 68233 0.66 0.53516
Target:  5'- gGCCAGAUC-GCUCgCCA-GCgagUCCGGCa -3'
miRNA:   3'- gUGGUCUAGcCGGG-GGUaCG---GGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 69061 0.67 0.460127
Target:  5'- -uCCAuGAU-GGCCgcauaaCCC-UGCCCCGGCu -3'
miRNA:   3'- guGGU-CUAgCCGG------GGGuACGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 74699 0.67 0.460127
Target:  5'- gACCAGGcgggugccgUCGGCgCCgAUGCCgauaUCGGCc -3'
miRNA:   3'- gUGGUCU---------AGCCGgGGgUACGG----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.