miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 94806 0.66 0.479691
Target:  5'- cUCGCCCggaGCGCCACAaugacaaaCCGUaucGCCc -3'
miRNA:   3'- aGGCGGGg--CGCGGUGUg-------GGCGaa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 22879 0.66 0.470568
Target:  5'- gCCGCCgCgGCGCC-UACCC-CUaccGCCg -3'
miRNA:   3'- aGGCGG-GgCGCGGuGUGGGcGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 55008 0.67 0.462433
Target:  5'- uUCCGCCCCGCcuaGCCAaGCUaacuauuaggcagggGCggGCCa -3'
miRNA:   3'- -AGGCGGGGCG---CGGUgUGGg--------------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 25747 0.67 0.461534
Target:  5'- gUUCGCCCCGCcgggGCCGC-CuuGgggGCCg -3'
miRNA:   3'- -AGGCGGGGCG----CGGUGuGggCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 32155 0.67 0.461534
Target:  5'- uUCUGCCCCGacCGCaGCGCCUuCaacgUGCCa -3'
miRNA:   3'- -AGGCGGGGC--GCGgUGUGGGcGa---ACGG- -5'
20407 5' -63.5 NC_004688.1 + 57953 0.67 0.452592
Target:  5'- cUCCGCagaCCGCgGCCcggggGCACCUcgggGCUgcugGCCu -3'
miRNA:   3'- -AGGCGg--GGCG-CGG-----UGUGGG----CGAa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 55728 0.67 0.452592
Target:  5'- aUCCGCCuuGgUGCCGC-CCaCGCagcgGCUg -3'
miRNA:   3'- -AGGCGGggC-GCGGUGuGG-GCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 97915 0.67 0.452592
Target:  5'- -aCGCaCUCcCGCCGC-CCCGCgcggGCCu -3'
miRNA:   3'- agGCG-GGGcGCGGUGuGGGCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 102774 0.67 0.452592
Target:  5'- --aGCgUCCGCGCCAgugGCCCGUUUGgCa -3'
miRNA:   3'- aggCG-GGGCGCGGUg--UGGGCGAACgG- -5'
20407 5' -63.5 NC_004688.1 + 76502 0.67 0.443746
Target:  5'- cUCGCCCauaaaggucuCGUGCCACAgCCCGUUauCCg -3'
miRNA:   3'- aGGCGGG----------GCGCGGUGU-GGGCGAacGG- -5'
20407 5' -63.5 NC_004688.1 + 39187 0.67 0.443746
Target:  5'- aCCGCCgguuuggucggCgGCGCUGgACCCGUUgGCCc -3'
miRNA:   3'- aGGCGG-----------GgCGCGGUgUGGGCGAaCGG- -5'
20407 5' -63.5 NC_004688.1 + 5257 0.67 0.443746
Target:  5'- -gCGCCCCGCauuggugucGCCGuCGCCCaGCcaguaGCCg -3'
miRNA:   3'- agGCGGGGCG---------CGGU-GUGGG-CGaa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 22959 0.67 0.434998
Target:  5'- -aCGCCaCCGaugGCCGCACCaGCgcGCCc -3'
miRNA:   3'- agGCGG-GGCg--CGGUGUGGgCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 37262 0.67 0.434998
Target:  5'- gUCUGCuCCCGCGCauauccacCACCCGUg-GCUu -3'
miRNA:   3'- -AGGCG-GGGCGCGgu------GUGGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 39064 0.67 0.434129
Target:  5'- gCCGCCuccuccgCCGC-CCGCACCUGCaccGCUc -3'
miRNA:   3'- aGGCGG-------GGCGcGGUGUGGGCGaa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 61685 0.67 0.42635
Target:  5'- aCCGCUCaGC-CCAgGCCUGCgcGCCa -3'
miRNA:   3'- aGGCGGGgCGcGGUgUGGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 100545 0.67 0.42635
Target:  5'- gCC-CCCCGCGCCGgccgccgaACCCGa--GCCc -3'
miRNA:   3'- aGGcGGGGCGCGGUg-------UGGGCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 36453 0.67 0.417806
Target:  5'- aCCGCUCCGCGCCGgacauuccaACCUGCggGg- -3'
miRNA:   3'- aGGCGGGGCGCGGUg--------UGGGCGaaCgg -5'
20407 5' -63.5 NC_004688.1 + 85560 0.67 0.417806
Target:  5'- uUCCGCCCauagagGCgGCCAUGCCC-CUUaCCg -3'
miRNA:   3'- -AGGCGGGg-----CG-CGGUGUGGGcGAAcGG- -5'
20407 5' -63.5 NC_004688.1 + 26000 0.67 0.417806
Target:  5'- gUCCGCCU---GCCAUACCCccggGCaUGCCg -3'
miRNA:   3'- -AGGCGGGgcgCGGUGUGGG----CGaACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.